barSeed - Barley Seed Development Database

Probe CUST_18964_PI390587928

Source Contig U35_23190

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18964_PI390587928	Hv_44K_v2	TTCAGGAGTTCCCCTCCGCGCTAGGGCCAGACACAGTAGACGCCTACCTCTTCCATCTGG	449	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.050	0.999	1.660	1.173	0.870	0.804
Raw	34.730	45.317	74.626	74.035	21.260	21.785

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75343.1	1939	2e-24	522 - 581	100	60 / 60	plus	ABC12981
MLOC	MLOC_75343.2	1934	7e-23	457 - 516	98	59 / 60	plus	ABC12981
JLOC1	JLOC1_50258.1	2035	8e-25	522 - 581	100	60 / 60	plus
Harvest21	ABC19904	620	3e-25	427 - 486	100	60 / 60	plus
Harvest35	U35_23190	643	3e-25	450 - 509	100	60 / 60	plus

Contig Sequence (643 bp)

>U35_23190 643 Hv_44K_v2
TGAAACCTCCCCTAACCCTCGCTCCCTCGATCTCCCCCCTCCAAAAATGTGGCGCCGCCA
CCTCCTCCGCCGCCTCCTACCATCGCCGGTCACCGCCGGCACCCCCTGCCCCTTGGTTCG
TCACCTCTCCACGGCCCCCGCTCCCTCCTCCACCACCGATACCACCTCCATCGCCTCCTC
CCTCGCCGCGGCGGTCACCAAGCTCTCATCCACCCTGGCCCCAGCCACCTCCCCGGACGC
CTACTTCTCCCTCCACTTCTCCGACGTCCGCCCCACCAACGCGCTCCTCGCCGAGACGCT
CTCCCTATCCCCTCCCGCCACCTCGCGCGCTGCCGCTGACCTCTTCCGCTTCCTCGTCCG
CCGCTCGCTCCACCCCTCCGACGGTGCTCTCGCGCTCGTTGTCCGCCATCTCGCCCGCCG
CCGCGACTTTCCAGCCGTCCGCACCCTCCTTCAGGAGTTCCCCTCCGCGCTAGGGCCAGA
CACAGTAGACGCCTACCTCTTCCATCTGGCGAGAGCTGGGCGCGCCACGGACGCGCTCAA
GGTGTTCGACGAATTGCCTGGGGAGCTTCGCACCCGTAGGGCGCTCACTTCGCTGGTCTC
CTCCCTCTCGTCCGAGGGCTTCCCACAGCTTGCAGAGCGTGCT

Homology of Contig U35_23190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g41260.1	487	4e-64	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g22060.1	482	6e-78
Arabidopsis v10	None