barSeed - Barley Seed Development Database

Probe CUST_18963_PI390587928

Source Contig U35_23191

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18963_PI390587928	Hv_44K_v2	AATCGGCCCGTGAAACCTGGTACCAGTGTACTACTACTAGCATCTTGGTTTTCTAAAAAA	912	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.229	1.777	1.085	0.819	0.361	0.468
Raw	480.848	584.136	326.118	398.685	59.697	84.237

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20955.1	1667	3e-21	1439 - 1492	100	54 / 54	plus	ABC16955
JLOC1	JLOC1_14531.1	1491	2e-21	1300 - 1353	100	54 / 54	plus
Harvest21	ABC16955	983	3e-25	12 - 71	100	60 / 60	minus	ABC16955
Harvest35	U35_23191	983	3e-25	913 - 972	100	60 / 60	plus

Contig Sequence (983 bp)

>U35_23191 983 Hv_44K_v2
AAGTGAAGAGCTCCGTGTATTCAGCTTACGAAGCCAGAGCCACANAACCAAAGTTCTCCC
ATCTGTCAGTGTCGCCCTGCCCGCTCCCCATCCCCCTCCCGTTCCCGTCAATCTTCAGGA
GCAACATCAGCCAGCACGGCGAGATCCTCGGCAACCACGCAGAGGGAACCCAGACAAAGG
GCTCACTCGACGTCGAGTCGATACCGATGGCCGCACGCCTAAGGTCGAGCAACGCGGTCC
TGCCCTTCATCGAGAGGCGCTCACTGAGCCTCCAGAAGTTTGGTGTCGCCAGGGGCGCTC
TGGGGACCCAGATACTCCGCGACTGGGGCTTCGGAAGGGAGGAGATGGAGGACATGGGGG
AGCACCTGTCCAGGATGGTTCGCGCGCTTCGCCCCGACGACGGCCTAACATCGGATTCTG
ACTAAAACTCTTGTGACACGGTGCAGCAGAGGAGGTGGAATATTCTCGTGCGTGTGCTAC
GTACCTGCTTTGCTTTTGCAATCGAACCGGAGATGCGATCTGGCGTGCGAGGGTGGGGTT
TTGTGATGTATATGCCCATGGCCGTTGGTGTTATCTCAGCACGGGCGTATGCAATGCCCA
CACATGCGATTGTTGTGACATTCTGGCCCATGTTGAGCCTGGATCCAGATCGCCCAGATC
TCCGTTTTCTTTTCCGTTGTTTCTCTGAGGTCGGGTGCCAATGCGGCTTCTGCATCGCAC
TTGCGGGGATTTTGCAGAGATGGGAAAGCTGATGACATGACCGACCTGTGCAGCCTCTAT
CTCTGATGCTTCATGCTTGCATGCACGCCATCAAATTTCGGACGACTTTGGCACACGAGT
GTTGCGAATTTGACTGTTGTGGGGCATGGAGTTCAACATGGCGCGGCACGAGCTACGCTC
CTGTACGATTACAATCGGCCCGTGAAACCTGGTACCAGTGTACTACTACTAGCATCTTGG
TTTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_23191 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g03150.1	572	4e-56
Arabidopsis v10	None