barSeed - Barley Seed Development Database

Probe CUST_18960_PI390587928

Source Contig U35_23194

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18960_PI390587928	Hv_44K_v2	TTGCTTTCCCTGATGAGTGAACCTTATGCATATCAGCATACTCCCCTTTTCAGTAAAAAA	626	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.711	1.580	1.218	0.800	0.234	0.204
Raw	933.391	1366.133	917.665	932.140	96.577	91.928

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC35446	342	3e-25	272 - 331	100	60 / 60	plus	ABC35446
Harvest35	U35_23194	697	3e-25	627 - 686	100	60 / 60	plus

Contig Sequence (697 bp)

>U35_23194 697 Hv_44K_v2
AGGCCATGGAGGTATACAGGAGCTTGCAGGAGAAGGGGGCGGAGGGGAACTCTGAGGCGA
AGTCGGCACCGGAGTGCGCAACATACGCATGCATGGTGGGGGCGCTGTGCAGCGAGGGGA
GGTTGTCAGAGGCGGAGGACGTGTTCTACGAGGGGGTAAAGCGCAAGAAGGTGGCAGATC
TGGGCACAGTGCGTAAGCTGGTAGTGGCTCTCAAGGAGGCTGGCAAGGGTCGGGCGGCGA
GACGGGTGGTGGTCGGGCTACGCAAGAAGTTCCCTGACCAGTTCGACGGTCCATGGAAGG
AGCTTGAGAAGGATGCCGGCCTCACACCGGGTGCCAGCAACGAAGAGGAGGAAGTGGAGG
AGGACGAGCAGCAGCAGCCAGAGAAGACGGCGGCGGCGGTATGACCATTCGCGGCAACAT
CTGGAGGTGACCATTTTGTACTTGTTTGATGAATCGTTTAATAAGTAAATTCTGAGGTTA
CAAGAGAACGGTGTTGGTCTGGTTTATCGCATACATAGTTTTTGGATGTGGTGCCTCGCT
GCTGACTTGCTACTGAATGCCAGGGCATTTTAGACGATGAAGTGCATTCCTATATTGCTA
GTTGAATTTACGTCACACATGAGGATTTGCTTTCCCTGATGAGTGAACCTTATGCATATC
AGCATACTCCCCTTTTCAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_23194 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None