barSeed - Barley Seed Development Database

Probe CUST_18957_PI390587928

Source Contig U35_23198

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18957_PI390587928	Hv_44K_v2	TCTTCGCGCAATGCAAGACGCACTCCGAGTCGCACCGGAGCGGCGAGTGCAACATGTTCT	498	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69702.3	1491	2e-24	1075 - 1134	100	60 / 60	plus	None
MLOC	MLOC_69702.2	2378	2e-24	1235 - 1294	100	60 / 60	plus	ABC30458
MLOC	MLOC_69702.1	2183	2e-24	842 - 901	100	60 / 60	plus	ABC30458
JLOC1	JLOC1_46207.1	1745	8e-25	556 - 615	100	60 / 60	plus
Harvest35	U35_23198	579	3e-25	499 - 558	100	60 / 60	plus

Contig Sequence (579 bp)

>U35_23198 579 Hv_44K_v2
GACTGACTTGGGACGATAAGAACGAGACACGCGCACTCGGAGCCGGAGAGAGAGACCCCT
CCCATTCCCATTCCCCTTCCCATTCCCGTCCCCGTTCCCGTTCCGTCCTACTAAACCCCT
CCGTCGTCTACTTCTAGACGGACGCCCAGCACCCGTCCATATATCGCTTCTTCCGCCGCT
CCGCCTCCACGCGCACCAACCGCCCGCCCTTCGATTCCCCCGAGGCCCCTGAAGAAGAAG
AAGAAGAAGAAGAAGCAGCAGCAGCAGCAAACAAGACCCATTCTTCTGGTTCTTGGTGCG
GTGCGGTGCGGCGCGCGGGCATGGCCATCGACCACGAGTCGCCGTTCAAGGAGCTCCGCC
TCAAGAACAGGAGGATCATGGGAGGCGGCGCCCCCGAGCCGGAGGAAGAGGAGGCGGAGC
CGCAGGTGGCGGCGGCCACGGCGGCGGGGGAGGAACAGCAGTGGCCGCAGTGGCTGCGCC
CGCTGCTGTCCGCGCGCTTCTTCGCGCAATGCAAGACGCACTCCGAGTCGCACCGGAGCG
GCGAGTGCAACATGTTCTGCCTCGACTGCGCCGCCGGGG

Homology of Contig U35_23198 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None