barSeed - Barley Seed Development Database

Probe CUST_1894_PI390587928

Source Contig U35_2772

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1894_PI390587928	Hv_44K_v2	CGGCATGGCATTATTTGTGTTTAATGTGCTACGAATATCTTTGTCCAAGCTATACATATA	1833	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.199	1.370	1.279	0.881	0.295	0.249
Raw	1125.060	2066.752	1641.147	1796.173	211.925	193.767

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250457.1	1967	2e-24	1895 - 1954	100	60 / 60	plus	ABC06578 ABC09327
JLOC1	JLOC1_53176.1	1455	8e-25	1271 - 1330	100	60 / 60	plus
Harvest21	ABC06578	1984	3e-25	1834 - 1893	100	60 / 60	plus	ABC06578
Harvest35	U35_2772	1984	3e-25	1834 - 1893	100	60 / 60	plus

Contig Sequence (1984 bp)

>U35_2772 1984 Hv_44K_v2
GCTCCACTCCACTCCACTCTCCACTTCGCTCCCAAATCTCCTCATCTCTTTTCTCTTTCT
TTCTTTCTCCACGCGCACCGCCACCGCCACCGCCACCGTGCCGAGCCGAGACGAGGGAGA
GCGGCGTGCGTGCGTGCGTATAAATCCATCCATCCGTAGGCCGTAGCCGTAGATCCACGG
AGCCAACCCGATCCCCTATCTTTTCCCTCCCTCCTCTGTTTCTCTGTCCCGGCGCAGGGG
AGAGGCGATGGAGATTTTCTACTACCTTGTGTTCGGGGGCCTGTCGGCGGTGGTGGCGGG
TCTGGAGCTGGGCAAGAGCGGCAAGGACCGCGTCGCCACCACCACCGCATTCAACGCTTT
CAAGAACAACTACGTCCTAGTATACTCCCTAATGATGTCCGGCGACTGGCTTCAGGGCCC
CTACGTCTACTACCTCTACAGCCAGTACGGGTTCGACAAGGGCGACATCGGCCGCCTCTT
CATCGCCGGCTTCGGCTCATCCATGCTATTCGGAACCATAGTAGGCTCGCTCGCAGACAG
GCAGGGCCGCAAGCGCGCGTGCATCACCTACTGCGTCACCTACATCCTCAGCTGCATCAC
CAAGCACTCCCCGCAGTACAGGGTCCTCCTCCTCGGCCGCATCCTCGGCGGCGTCGCAAC
ATCCCTCCTCTTCTCCGCATTCGAATCATGGCTCGTAGCCGAGCACAACAAGAGAGGCTA
TGACCCGCAGTGGCTGTCCATCACATTCTCAAAGGCTATATTCCTCGGAAATGGTCTCAT
CGCCATTATAGCCGGGCTGTTTGCTAACCTGCTCGCTGACAACTTGGGCTTCGGTCCCGT
GGCTCCCTTTGATGCCGCTGCGTGCTTCCTGGCGATAGGCATGGCCATCATCATGTCTTC
ATGGAGTGAAAACTATGGAGATCAATCTGAAGGCAAGGACTTGATGTCCCAGTTCAAGGT
TGCCGCTAAGGCGATTGCTTCAGATGAGAAAATCGCATTGCTGGGAGCCATTCAGTCGCT
GTTCGAGGGCTCAATGTACACCTTTGTCTTCCTCTGGACTCCAGCATTGAGCCCGAACGA
CGAAGACATTCCCCATGGCTTTATATTCGCTACCTTCATGCTGTCATCTATGTTGGGTAG
CTCCATTGCCTCACGCCTACTGGCCCGGAAAATGAAGGTTGAAGGTTATATGCAGATCGT
GTTTGCAGTATCAGCCTTCACCCTTTTCCTCCCAGTTGCCACCAGCCTTCTGGTGCCGGC
GTCTTCAGTGAAAGGAAGCGGCATATCGTTCGGTGGCTCCCTGCAGCTGCTTGGTTTCTG
TACCTTTGAGTCATGTGTTGGCATTTTCTGGCCATCTATCATGAAGATGAGATCTCAGTA
TATCCCTGAGGAGGCAAGGAGCACCATCATGAACTTCTTCCGCATACCACTGAACCTGTT
TGTGTGTGTGGTGCTCTACAATGTGAATGCTTTCCCTATCACCGTCATGTTTGGCATGTG
TTCAATCTTCCTCTTCATGGCGGCAATCTTGCAGAGACGGCTGATGGTTGTGGCTGACCT
ACACAAGCTCTCGACAAAATCACAAGAGATGACCGGGGAAGACGAGCCGCTAAATCCTTA
AAAGGCCAACAGAATCGGGAGCGAATCAGATACGCCATTGATTGAATACTCCACCTGCCT
GGGTGCCGAATAAGATGGAAGTGGGGAAAGCAAGATGCTTTTTGCTTGTAATATTTATTC
TGTAGCGTAGATCAATATTATTGGCTAGGCACACGAGGACATCGATGAATACATAGTTGG
GAGGAAGAATTGAGAGGCTGCTGATTTGTTCATCGGCATGGCATTATTTGTGTTTAATGT
GCTACGAATATCTTTGTCCAAGCTATACATATATTATTATTACACCAGATAACAATATCT
GAGTGAATCTATTGCAAAAAAAAAAAGGAATTAAAAAAAAAAAAAAAACACTCGATACTA
GTTC

Homology of Contig U35_2772 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g37520.1	457	protein\|major facilitator superfamily domain-containing protein 5, putative, expressed
Brachypodium v1_2	Bradi1g77580.1	458
Arabidopsis v10	AT1G64650.1	462	Major facilitator superfamily protein \| chr1:24023805-24026336 REVERSE LENGTH=462