barSeed - Barley Seed Development Database

Probe CUST_18938_PI390587928

Source Contig U35_28038

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18938_PI390587928	Hv_44K_v2	GAAAACATGCTCATCTGTGTTACCATTTTATGAATCAGCAACGATACTTCTCCCAAAAAA	2708	GeneList: saddlebrown MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.193	0.515	0.973	1.298	0.998	1.324
Raw	1817.487	6967.197	12405.363	24550.733	6886.467	9900.910

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54228.1	1146	7e-23	1038 - 1094	100	57 / 57	plus	ABC03761 ABC26656
JLOC1	JLOC1_34898.1	1016	4e-23	833 - 889	100	57 / 57	plus
Harvest21	ABC26656	2779	3e-25	2709 - 2768	100	60 / 60	plus	ABC26656
Harvest35	U35_28038	2779	3e-25	2709 - 2768	100	60 / 60	plus

Contig Sequence (2779 bp)

>U35_28038 2779 Hv_44K_v2
GGCGAGATGGCGGCGCCGGCGTTCGCAGTTTCCGCGGCGGGGATCGCCCGGCCATCGGCT
CGTCGATCCAGCGGGGCAGAGCCGAGATCGCTGCTCTTCGGCCGCAACAAGGGCACCCGT
TTCCCCCGTGCCGTCGGCGTCGGAGGTTCTGGGTGGCGCGTGGTCATGCGCGCGGGCGGC
CCGTCCGGGGAGGTGATGATCCCTGACGGCGGTAGTGGCGGAAGCGGAACACCGCCTTCC
ATCGAGGGTTCCGTTCAGTTCGAGTCTGATGATCTGGAGGTTCCATTCATCGACGATGAA
CCAAGCCTGCACGATGGAGGTGAAGATACTATTCGGTCTTCAGAGACATATCAGGTTACT
GAAGAAATTGATGCTGAAGGCGTGAGCAGAATGGACAAAGAATCATCCACGGTGAAGAAA
ATACGCATTGTGCCACAACCCGGAAATGGACAGCAAATATACGACATTGACCCAATGCTC
CGAGACTTTAAGTACCATCTTGAGTATCGATACAGCCTATATAGGAGAATACGTTCAGAC
ATTGATGAATACGATGGAGGCATGGATGTATTTTCCCGCGGCTACGAGAAGTTTGGATTT
GTTCGCAGCGCTGAAGGTATCACTTACCGAGAATGGGCTCCTGGAGCAGATTCTGCAGCA
TTAGTTGGCGACTTCAACAATTGGGATCCAACTGCAGACCATATGAGCAAAAATGACTTG
GGTATTTGGGAGATTTTTCTGCCAAACAATGCAGATGGTTCGCCGCCAATTCCTCATGGC
TCACGGGTGAAGGTGCGGATGGATACTCCATCTGGGACAAAGGATTCAATTCCTGCTTGG
ATCAAGTACTCCGTGCAGACTCCAGGAGATATACCATACAATGGAATATATTATGACCCT
CCTGAAGAGGAGAAGTATGTATTCAAGCATCCTCAACCTAAACGACCAAAATCATTGCGG
ATATATGAAACACATGTTGGCATGAGTAGCCCGGAACCAAAGATCAACACATATGCAAAC
TTCAGAGATGAGGTGCTTCCAAGAATTAAAAGACTTGGATACAATGCAGTTCAAATAATG
GCAATCCAAGAGCATTCATACTATGGAAGCTTTGGGTACCATGTTACCAATTTCTTTGCA
CCAAGTAGCCGTTTTGGGTCCCCAGAAGATTTAAAATCCTTGATTGATAGAGCTCACGAG
CTTGGTTTGCTTGTCCTGATGGATGTTGTTCACAGTCACGCATCAAGTAATACCTTGGAC
GGTTTGAATGGTTTTGATGGCACGGATACACATTACTTTCATGGCGGCTCACGGGGCCAT
CACTGGATGTGGGATTCTCGTGTGTTCAACTACGGGAATAAGGAAGTTATAAGGTTTCTA
CTTTCCAATGCAAGATGGTGGCTAGAGGAATATAAGTTCGATGGTTTCCGATTCGACGGC
GCGACCTCCATGATGTATACCCACCATGGATTACAAGTAACCTTTACAGGGAGCTACCAT
GAATATTTTGGCTTTGCCACGGATGTAGATGCAGTTGTTTACTTGATGCTGGTGAATGAT
CTAATTCACGCGCTTTATCCTGAAGCCGTTACTATTGGTGAAGATGTTAGTGGAATGCCT
ACATTTGCCCTTCCTGTTCAAGTTGGTGGGGTTGGTTTTGACTATCGCTTACATATGGCC
GTTGCCGATAAATGGATTGAACTTCTCAAAGGAAGCGATGAAGGTTGGGAGATGGGTAAT
ATTGTGCACACACTAACAAATAGAAGGTGGTTGGAAAAGTGTGTTACTTATGCTGAAAGT
CATGATCAAGCACTTGTTGGAGACAAGACTATTGCATTCTGGTTGATGGACAAGGATATG
TATGATTTCATGGCTCTGAACGGACCTTCGACACCTAATATTGATCGCGGAATAGCACTG
CATAAAATGATTAGACTTATCACAATGGCTTTAGGAGGAGAGGGTTATCTTAACTTTATG
GGAAATGAGTTCGGGCATCCTGAATGGATAGACTTTCCAAGAGGCCCACAAGTACTTCCA
ACTGGTAAGTTCATCCCAGGAAATAACAACAGTTACGACAAATGCCGTCGAAGATTTGAC
CTGGGTGATGCAGAATTTCTCAGGTATCATGGTATGCAGCAATTTGATCAGGCAATGCAG
CATCTTGAGGAAAAATATGGCTTTATGACATCAGACCACCAGTACGTATCTCGGAAACAC
GAGGAAGATAAGGTGATCGTGTTTGAAAAAGGGGACTTGGTATTTGTGTTCAACTTCCAC
TGGAGTAATAGCTATTTCGACTACCGGGTCGGTTGCTTAAAGCCTGGGAAGTACAAGGTG
GTGTTAGACTCAGACGCTGGACTCTTTGGTGGATTTGGTAGGATCCATCACACTGGAGAG
CACTTCACTAATGGCTGCCAACATGACAACAGGCCCCATTCGTTCTCAGTGTACACTCCT
AGCAGAACCTGTGTTGTCTATGCTCCAATGAACTAACAGCAAAGTGCAGCATGCGCATGC
GCGCTGTTGTTGCTTAGTAGCAACATAAATCGTATGGTCAATACAACCAGGTGCAAGGTT
TAATAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTCA
ACCAGTCCTGGATAGACAAGACAACATGATGTTGTGCTGTGTGCTCCCAATCCCCAGGGC
GTTGTGAGGAAAACATGCTCATCTGTGTTACCATTTTATGAATCAGCAACGATACTTCTC
CCAAAAAAAAAAAAAAAAA

Homology of Contig U35_28038 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g32660.1	826	protein\|1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g44760.1	836
Arabidopsis v10	AT5G03650.1	805	\| Symbols: SBE2.2 \| starch branching enzyme 2.2 \| chr5:931924-937470 FORWARD LENGTH=805