barSeed - Barley Seed Development Database

Probe CUST_18933_PI390587928

Source Contig U35_30353

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18933_PI390587928	Hv_44K_v2	ACCTTCGCCGCCTCCCTCCTCCTCCTCCTCGCCTTCACCGCCACCGCCATCGTGGGGTGC	346	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.430	0.514	1.052	0.956	1.148	1.319
Raw	6933.833	12142.867	23157.433	29713.333	13547.767	17375.800

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364222	1933	2e-24	371 - 430	100	60 / 60	plus	ABC26386
MLOC	MLOC_62752.1	850	2e-24	92 - 151	100	60 / 60	plus	None
Harvest21	ABC30247	406	3e-25	347 - 406	100	60 / 60	plus
Harvest35	U35_30353	406	3e-25	347 - 406	100	60 / 60	plus

Contig Sequence (406 bp)

>U35_30353 406 Hv_44K_v2
TGCTGCTCAGAGTCTTTGGTCAGCTATGGGGTCGTCTAGCCGGCGCACGCTCCTCGCCGT
CCTCCTCGCGTCCTCCTTGTGCGCCAGCTCGGCGGCGGCGGCGCCGCTGGCGGCCGAGCG
GACCCGCCGGAAGGACCCGCTGGACGGGCTCCGGCCCTACGCCGGCGGCTGGAACATCAG
CGACCGGCACTACGTCGCCTCGGTGGCCTTCAGCGCGGCGCCGGTGTTCGCGGCGGCGGC
GGTCTGGTTCGCCGGCCTCGCCCTGGCGGCGCTCGCGGCCTGCTGCTGCCGGTGCTGCAG
CCGCGGCAGCCCCACCAGGGACGACGACTACTCCTACTCCCGCAAGACCTTCGCCGCCTC
CCTCCTCCTCCTCCTCGCCTTCACCGCCACCGCCATCGTGGGGTGC

Homology of Contig U35_30353 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None