barSeed - Barley Seed Development Database

Probe CUST_1892_PI390587928

Source Contig U35_2774

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1892_PI390587928	Hv_44K_v2	TCCGGGACCAATTTGATTTGTGAAAATTCGGTGGAACTTCACCGAGCCCATAGCAAAAAA	1483	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.128	2.003	1.200	0.911	0.375	0.396
Raw	22.496	56.542	31.871	37.843	4.131	5.958

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8849.1	898	1e-22	827 - 882	100	56 / 56	plus
Harvest35	U35_2774	1554	3e-25	1484 - 1543	100	60 / 60	plus

Contig Sequence (1554 bp)

>U35_2774 1554 Hv_44K_v2
TTCCATTGCCCCAACCCCTACCAATCTCAGGTCAACCGACTCTATCCAACAAGACCCAGC
CCCCTTCGCAAGGCCGAAGCTGACCCCCACCCCCACCCCCACCCCCACCAACCCCTCCTC
CCTCCCTCCCTCAATTATTATAAGTTGTTAGCATTGTTAATCACTTCAGAGTCGACCGAT
CCATCCGACCATCAGCTGTATTGTTCGGTGGATGACAGCAGGGGAGAGGTGCGATTCTGA
CTTTCTGAGGGGCGGCTGGATTCCAAGAAACCATCTTCTTGTGCTGCTAGCTAGGGGCGA
CGCAGTTTCTGTCAGGGAATTGTAAACCGGTGGTCTCGAGGAACCCAATCCCATGGCCGG
CAAGGAAATCTACCACAAGATGAAGGACAAGGTGAAAGATGCTTTTAGTTCGTCAGGGCC
AGAAACAGGGAAAGGCAAGACAAAATTGTCAGGCAGGCGTGTCAAGCATGGTTACCATCT
TGTCAAGGGGAAATCAAATCATCCAATGGAGGACTACTTGGTGGCGGAGTACAGGCAAGT
TGGGGAGCATGATTTGGGTTTGTTTGCAATATTTGATGGCCACCTGGGCCACACTGTTCC
AGACTTTCTGCGTGCACATCTCTTTGATAACATCTTGAGCGAGCCAGAATTCTTGAGTGA
CACGAAAAATGCTATTAGAAAAGCATATCTACTTACCGATGAGAAAATATTGGAAAAAGC
AGCTGAGTTGGGAAGAGGAGGCTCCACGGCTGTTACCGCCATCTTGATAAGCAGTAACGA
TAGTGTGAAGCTAGTGGTCGCAAATATTGGAGATTCACGAGCAGTTATTAGCAAGAATGG
TAAAGCAGAGCAGCTTTCAGTTGATCATGAGCCTAGCATGGAGCGACAAATTATTGAGGA
AAAAGGTGGATTTGTTTCGAACCTACCAGGAGATGTCCCACGAGTTGATGGGCAGCTGGC
TGTTGCAAGAGCATTCGGAGACCGGAGCTTGAAAAAGCACCTCAGTTCTGAGCCACACGT
GGCTGAGGAAGTCATCGATGAGAGTTCAGATTTCCTAATTCTAGCAAGTGATGGCCTGTG
GAAGGTGATGACCAACCAAGAGGCTGTTGATGAGATCAAGGACATCAGGGACGCACAGGC
AGCTGCGAAACATCTAACGGAGCAGGCGGTGAACAGGAAGAGCAAAGACGACATCTCCTG
CGTCGTCGTAAACTTCCACTGCTAGCAGAGCTTGAAGCTGCTAGCCTCTCAAGTGTACAA
TTGCTTTTATGTCAGATTGGTTTTACGGTTCAGCTGTTGTTGGTCGGATATTGTGTTCAA
TCTTTTCTTGTTGGGAATAATCCACCACCCAAGGGGATCAAGGTTTTTTAGAATATTGTT
GTTTGTTCAAAGGCTATAATAAAAGTGTTTCTCTTTTTGTCAAAAAAAAAAAAAAAGCGA
GTTCCTTGGTTTCCTTTGGGTCCAGTTGGGTTTTAGGGTCGGTTCCGGGACCAATTTGAT
TTGTGAAAATTCGGTGGAACTTCACCGAGCCCATAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2774 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32380.1	291	5e-178	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi1g26690.1	291	0.0
Arabidopsis v10	AT3G15260.1	289	7e-128	Protein phosphatase 2C family protein \| chr3:5138842-5140242 FORWARD LENGTH=289