barSeed - Barley Seed Development Database

Probe CUST_18915_PI390587928

Source Contig U35_42332

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18915_PI390587928	Hv_44K_v2	GGCATGGTTTTCTCTTTATTTAGTTGAGGCAGTGTAATGTACTGTTTTTCATGCTATTCA	43	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.572	1.577	1.193	0.736	0.304	0.295
Raw	4220.713	6537.327	4373.500	4248.417	609.441	649.567

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66305.1	3253	2e-24	1005 - 1064	100	60 / 60	minus	ABC04530 ABC37952
Harvest21	ABC37952	564	3e-25	44 - 103	100	60 / 60	minus	ABC37952
Harvest35	U35_42332	564	3e-25	44 - 103	100	60 / 60	minus

Contig Sequence (564 bp)

>U35_42332 564 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATAGAATCTTTAGCTTCATAAATGCTGAATAGCATGAAAAAC
AGTACATTACACTGCCTCAACTAAATAAAGAGAAAACCATGCCGTTTGCTGGCAGTAAAA
AAACTTGACAGATAGTTTCAGGAATCAAACACTGAAAGAGGGCAACCTTATTTTGCTGGC
CTACTGAAGAGCTAGTTCTTTCTTCTACCCATCTGTTAACATCTACCAAGATGCTTTCTT
AACACCCATCAGTTCACCCTTATTTGCCAAGGTACGGAACACGATACGAGACATGCGGAA
TTTTTGGTAGACACCACGAGAGCGGCCCGTGAAAATACAGCGGTTTCTAAGACGTGTCAT
GTTACTATTTCTTGGCAGCTTGGACAACTTATAGCGAAACTTATCCCGCATATCTGATGG
AAGATCAGGGTCCCTACAGACAGACTTATAAAGCTTTCCTCTCAGCTCATATTTTGCTGC
AAGCAATCTACGTTTGTGATCACGCATGTTTCTCTTCTCTGAGACCCCATGATATCCTCG
AGCTTGGACGTGCATGAACATGCT

Homology of Contig U35_42332 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g02640.1	351	4e-67	protein\|succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi3g13980.1	350	4e-72
Arabidopsis v10	None