barSeed - Barley Seed Development Database

Probe CUST_18912_PI390587928

Source Contig U35_42334

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18912_PI390587928	Hv_44K_v2	ACACGTTATATGGTCAAGCCATGAAGCATAACACTTAGCTTTTTGTAGAATATTTTGCAC	374	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63302.1	3253	3e-21	2310 - 2369	97	58 / 60	minus	ABC03476 ABC03477
JLOC1	JLOC1_41451.1	3217	2e-21	808 - 867	97	58 / 60	plus
Harvest21	ABC37954	434	3e-25	375 - 434	100	60 / 60	plus
Harvest21	ABC03476	3313	6e-22	522 - 581	97	58 / 60	plus	ABC03476
Harvest35	U35_42334	434	3e-25	375 - 434	100	60 / 60	plus
Harvest35	U35_15427	2017	6e-22	524 - 583	97	58 / 60	plus

Contig Sequence (434 bp)

>U35_42334 434 Hv_44K_v2
GGGGCGCAGGAGGCGCAGGTCTCCGGGCGGCCATCGGGCTCTCGGAGCACGGCTTCAACA
CCGCCTGCATCACCAAGCTCTTCCCCACGCGGTCGCATACCGTCGCAGCGCAGGGAGGCA
TAAATGCTGCTCTAGGAAACATGAGCGAAGATGACTGGAGGTGGCATATGTATGATACAG
TCAAGGGAAGTGACTGGCTTGAGAAGCACCAAAAGCTGTTATAGAACTTGAAAATTATGG
ATTGCCATTTTCAAGAACTGAAGATGGAAAGATATACCAACGTGCCTTTGGAGGCCAGAG
TTTAGATTTTGGGAAAGGCGGACAGGCCTACCGATGTGCATGTGCTGCTGACAGGACAGG
ACATGCTATGCTCCACACGTTATATGGTCAAGCCATGAAGCATAACACTTAGCTTTTTGT
AGAATATTTTGCAC

Homology of Contig U35_42334 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g04240.1	631	2e-68	protein\|succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g57930.1	621	5e-69
Arabidopsis v10	AT5G66760.1	634	3e-68	\| Symbols: SDH1-1 \| succinate dehydrogenase 1-1 \| chr5:26653776-26657224 FORWARD LENGTH=634