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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_18908_PI390587928Hv_44K_v2AAGTTTGAAAGTTTGGAAGTGGTTTCAGAAATCTTCGGCAAGGCCCCTAGCAAAGGAGTC149GeneList: darkorange
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.9941.0012.3012.0050.7750.683
Raw 239.213350.103768.2991048.818143.324139.941



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC0353815913e-251096 - 115510060 / 60plus
Harvest35U35_423366453e-25150 - 20910060 / 60plus



Contig Sequence (645 bp)

>U35_42336 645 Hv_44K_v2
GAGACAGACATGCTCTGCAAAGGTTGCGTGAAGCAGCTGAGAAGGCAAAAATTGAACTCT
CATCAACTGCACAGACTGAGATTAACCTTCCTTTTATCACGGCTGATGCTGCTGGAGCAA
AACATTTGAATATAACATTGACAAGATCAAAGTTTGAAAGTTTGGAAGTGGTTTCAGAAA
TCTTCGGCAAGGCCCCTAGCAAAGGAGTCAACCCAGATGAAGCTGTTGCCATGGGTGCTG
CTCTTCAGGGTGGCATTCTCCGTGGAGATGTCAAGGAGCTTCTTCTCCTTGACGTAACCC
CTCTTTCACTTGGTATTGAGACTCTTGGTGGTATCTTTACCAGACTGATAACCAGGAACA
CTACCATCCCCACAAAGAAAAGCCAGGTGTTCTCAACTGCTGCTGACAACCAGACGCAAG
TGGGTATCCGTGTCCTGCAAGGTGAGCGTGAGATGGCGACAGACAACAAACTTCTTGGCG
AGTTTGATCTTGTCGGCATCCCACCAGCGCCAAGAGGACTGCCACAGATTGAGGTCACAT
TTGATATCGATGCCAATGGAATCGTGACGGTCTCTGCAAAGGACAAGGCCACCGCAAAGG
AGCAGCAGATCACCATCCGATCATCCGGTGGGCTTTCTGAGTCTG



Homology of Contig U35_42336 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g53420.16805e-125protein|DnaK family protein, putative, expressed
Brachypodium v1_2Bradi3g57450.16823e-128
Arabidopsis v10AT5G09590.16823e-121| Symbols: MTHSC70-2, HSC70-5 | mitochondrial HSO70 2 | chr5:2975721-2978508 FORWARD LENGTH=682