barSeed - Barley Seed Development Database

Probe CUST_188_PI390587928

Source Contig U35_21899

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_188_PI390587928	Hv_44K_v2	TGCTATTCAGAATCAGTAAATCTCCCAGGGAAACCTCGAGAATTGGAGGACTGGATACTG	897	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252415.1	4121	7e-23	964 - 1024	98	60 / 61	plus	ABC12140
MLOC	MLOC_74190.1	1108	7e-23	77 - 137	98	60 / 61	minus	None
JLOC1	JLOC1_49434.1	1227	4e-23	956 - 1016	98	60 / 61	plus
Harvest21	ABC38899	670	1e-23	610 - 670	98	60 / 61	plus
Harvest35	U35_21899	957	3e-25	898 - 957	100	60 / 60	plus

Contig Sequence (957 bp)

>U35_21899 957 Hv_44K_v2
ACCAAACTCAACTCCCCCACCACTCTCCCCTCCCCTCCGCATCTCGCCACTCCCCCGCCT
CGTCCCTGTCTCCGGCGACCTCCCTGGCGGCGGAGCGCTCGCCGCATGGAGGAGTAGCCC
CAGCGCCGAAGCTATCTCATTGCCCCTGAGCCGGCTGCGGTCATGGCCAACTATCTGGCA
CAGTTCCAGACCATCAAGTCCTCCTCCGACCGCATCGTCATCGCCGTTGAGGATGTCAGT
GACTTGTGGCTCAACGTCAAAGATAGTTTCAAGCAGCGCTTGCCAGTCAAGAAAGCCTGT
CTCAATAACAAGGCGAGGAACCCTGTTCTTGTGGAAAACCTACCAGCTGAGTTTATACAG
ACAACTGATTCAAGGCTGCGTAGTCGGTTTCCACAAGAACAATACTTGTTTTGGTTTCGC
GAACCGTATGCTACTGTTGTTCTTGTTACTTGCGAGGATCTTGATGAGTTCAAGACCATT
CTTAAGCCTCGCCTCAAATTAATTGTGCAAAATGATGAGAGAGAATGGTTCATTGTATTT
GTGTCGAAGGCCCATCCTAGCAATGATCAAGCAACTAAGATGGCAAAGAAAGTATACGCT
AGGCTTGAGGCCGATTTCAACACTAAAAAGAGAGAAAGGTGCTGCAAATTTGATCTGCAT
GGACCTGATGATGAATTCTGGGATGATTTTGACTCGAAAATGGTGGACTGCATAAGAAAC
ACATTGGATAGAAGGGTTCAGTTCTATGAAGAGGAAAACCGCAGGTTAAGTGAGCAGCGA
TTCACACCGATATGGAACTTCTGCAACTTTTTCATTCTGAAGGAAAGTTTGGCATTTATG
TTTGAGGTGACTAATCTTCATGAAGATTCACTCCGTGAATACGATGAGCTTGAACTATGC
TATTCAGAATCAGTAAATCTCCCAGGGAAACCTCGAGAATTGGAGGACTGGATACTG

Homology of Contig U35_21899 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g36760.1	1246	9e-169	protein\|expressed protein
Brachypodium v1_2	Bradi4g05110.2	1246	7e-170
Arabidopsis v10	AT5G54440.1	1259	2e-140	\| Symbols: CLUB, AtTRS130 \| CLUB \| chr5:22100056-22107695 FORWARD LENGTH=1259