barSeed - Barley Seed Development Database

Probe CUST_18888_PI390587928

Source Contig U35_30366

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18888_PI390587928	Hv_44K_v2	CCTATTGTTCAATGTTTATTTGTGAGCTTCAGTTCAAGACATGTAATGCTGGACACAAAT	472	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.297	0.378	0.523	2.297	1.869	3.674
Raw	4.706	9.046	12.820	93.043	25.762	54.437

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_43804.1	591	4e-23	66 - 122	100	57 / 57	minus
Harvest21	ABC30265	539	3e-25	473 - 532	100	60 / 60	plus
Harvest35	U35_30366	539	3e-25	473 - 532	100	60 / 60	plus

Contig Sequence (539 bp)

>U35_30366 539 Hv_44K_v2
CCCGGCGACTATATCCAAAAGAGCCAAGGTTAGCTCAAGGTCAACTGCAACCCTTTGATC
ATTGCTACAACCTGGTACTCCAGTCAGTTATCGATTGTCCGATCGCGGTGGTGCCGTGCG
TGCGACGATGAGCTCCACGGGCAACGGCTGCAAGAAGGCGTCGTGGCCGGAGGTGGTCGG
GCTGCCGGCCGATGAGGCCAAGGCCGTCATCCTCAAGGACAAGCCTGACGCCGACGTGAT
CTTGGTGCCTTTCGGGATGGGGGTGCAGCAGGACCTCAGGCTAAACCGCGTCCGCGTCTT
CGTCGGCACCATCGCCAGCGTGGTGACCGTCGTCCTCACCCCCCAGCCTGGCTAGCTAGG
GAGGTACGGTTATGGCTGTAGCTCTACATGTTCGTCTCGTGTTTGCTCCTCGCTCATGAA
ATAAATTCATAAACTGTGACCATCTTGCAAGTTGATTTCATGTATGTGCTACCCTATTGT
TCAATGTTTATTTGTGAGCTTCAGTTCAAGACATGTAATGCTGGACACAAATAAACAAA

Homology of Contig U35_30366 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None