barSeed - Barley Seed Development Database

Probe CUST_18878_PI390587928

Source Contig U35_16078

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18878_PI390587928	Hv_44K_v2	GAACAACCGGTCCCTGAGAAAATCAACTTTTTTGTGACCTAAATAAGAACTTATTTCGAA	2178	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.349	2.517	1.190	0.766	0.297	0.308
Raw	1248.606	2044.746	857.645	854.186	119.446	133.071

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67779.1	4540	7e-23	55 - 114	98	59 / 60	minus	ABC04921 ABC04922 ABC04923
JLOC1	JLOC1_44787.1	4462	4e-23	4379 - 4438	98	59 / 60	plus
Harvest21	ABC04921	1133	3e-25	17 - 76	100	60 / 60	minus	ABC04921
Harvest35	U35_16078	2254	3e-25	2179 - 2238	100	60 / 60	plus

Contig Sequence (2254 bp)

>U35_16078 2254 Hv_44K_v2
GAATTACCGTCATGCCTTCCCATACTTGTTCATAGGATGGGCAATGAAATAACACGACTC
ACAGCTGTCAAGGCATTTGCGGTGATTGCGAATTCACTTCTTCGGATTGATCTGTCATGC
GTCCTGGACCATGTCATTTCTGAGCTCACAGCTTTCCTTCGAAAGGCCAACAGAGCACTC
AGGCAGGCAACATTGGGGACCCTAAATTCTCTGGTTGTCACATATGGTGGTCAAATTGGC
TCGTCCTCTTATGAAACGATAATAGCTGAACTTTCTACTCTCATAAGTGACATCGATTTG
CATATGGCTGCTCTTGCATTGGAGCTGTGTTGCACAATAATGGTTGACAGAAGATCCATT
AAAAATGTCGGTTTAGCTGTGAGACATAAAGTTTTGCCTCAGGCCCTTATTTTGATCAGG
AGTGCTTTGTTGCAAGGACAAGCACTACAGGCGCTACAGAAGTTTTTTGCTTCACTGGTC
CAGTCTGCAAATACAAGCTTTGAAACATTGTTGGACTCCCTTATTTCAACTGCCAAGCCA
TCACAGTCAGGCGGTCTTTCCAAGCAGGCACTATCCTCTATTGCACAGTGTGTTGCTGTG
CTATGCTTAGCAGCTGGTGATCAGAAATGTGCATCAACTGTTGAAATGCTTAAAGGCATT
CTAAATGATGACAGTTCAACTAATTCTGCTAAACAACACATGGCCTTGTTATGTTTGGGA
GAAATTGGAAGAAGGAAGGACCTCAGCAATCATGTTCAAATTGAGAACATTGTCATCGAG
TCGTTCCAGTCACCTTTTGAGGAGATAAAGTCTGCAGCATCGTATGCTCTTGGAAACATT
GCTGTTGGCAATCTATCCAAGTATTTGCCATTCATCTTGGATCAGATTGACAATCAACAG
AAGAAGCAGTATCTCTTGCTTCATTCACTGAAAGAGGTAATTGCACGGCAGTCTGTTGAT
CATACTGGCCAAAGTGAGCTCCAGGACTCGAACATTGTGAAGATATTGGCGTTGCTATTT
AATCACTGTGAAAGTGAGGAGGAAGGAGTTCGGAATGTGGTTGCTGATTGTTTAGGCAAA
ATTGCACTGATTGAACCTAACAAATTAATCCCTGCTCTGAAGGAACGCACATGTAGCCCA
GCAGCAAACACAAGGGCTACAGTTGCCATTGCTATAAAATATTCAATCGTTGAACGGACT
GGAAAGATAGATGCAATCTTGTACTCTGAGATTTCTACTTTCCTTATGTTAATTAAAGAT
AGTGACAGGCATGTGCGACGTGCAGCTGTTCTTGCGTTGAGTACAGCTGCACACAACAAG
CCAAATTTGATCAAACGTCTTCTTCCTGAATTACTGCCCCTTTTGTATGACCAGACTGTC
GTGAAGCAAGAATTGATCAGGACCGTTGATCTAGGGCCTTTCAAGCACGTCGTTGATGAT
GGGCTTGAGCTTAGGAAAGCTGCCTTTGAATGTGTGGACACATTGCTGGATAGCTGTCTT
GATCAAGTGAATCCGTCGGCCTTCATCGTTCCTTTCCTCTTATCTGGCTTAGGTGATCAT
TATGATGTAAAAATGCCCTGCCATCTGATTCTCTCAAAGCTAGCAGACAAGTGCCCTTCT
GCTGTTCTTGCAGTTCTGGACTCGTTAGTTGAACCTCTTGAGAAAACTATCGTTCACAAG
CCCAAGGGTGATGCAGTGAAGCAGGAGATTGATCGCAACGAAGACTTAATTCGCAGTGCT
CTTCGAGCAATTGCCGCTCTAAACCGCATAAGTGGCAGTGACTACAGCATGAAGCTGAAG
AAGTTGATGAGCAAGATAACGTCCACTTCTTCACTTGCCGAGAAGTACAATTCGGTGCGC
AGTGAGTGAGAGCTGGATTTTGTGTGTATATATATGTTAGGACATAGTTGAGTCAAGTTG
GGCACACATGGCTGCCGATTCTGAGGCCAGTTAGTGGATTATACTGTACCAATTTTGGCT
GAAATGTGGTTGCGTTGTAGGGTATCGAGTATATTTTGCTGTACAAAATCTGGTGGTAGA
CCATTAGAAACCATTGCGGTAATTCAAAACTGAAAAAAAACGTCTTTGGTACCCATGTTG
CCCACGATAAGTTATGTTGGGATTTTGTGCGCCCAGCACGTGTTGAGAAAGTAACAGGTG
TAGGCAGCTTGGAGATGGGAACAACCGGTCCCTGAGAAAATCAACTTTTTTGTGACCTAA
ATAAGAACTTATTTCGAATATGAATACAATGGTA

Homology of Contig U35_16078 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g07120.1	1219	protein\|HEAT repeat family protein, putative, expressed
Brachypodium v1_2	Bradi1g17710.1	1220
Arabidopsis v10	AT2G02560.1	1219	\| Symbols: CAND1, ATCAND1, ETA2, TIP120, HVE \| cullin-associated and neddylation dissociated \| chr2:690345-697342 FORWARD LENGTH=1219