barSeed - Barley Seed Development Database

Probe CUST_18863_PI390587928

Source Contig U35_28057

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18863_PI390587928	Hv_44K_v2	CAAAAGTATGATCCAGATGGTGAATACGTAAGAACTTGGATTCCAGAGCTGGCCAGAATG	112	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363503	2977	2e-24	1904 - 1963	100	60 / 60	plus	ABC14562 ABC26678 ABC38182
MLOC	MLOC_8289.2	2488	2e-24	1919 - 1978	100	60 / 60	plus	ABC14562 ABC26678
MLOC	MLOC_8289.1	2849	2e-24	2266 - 2325	100	60 / 60	plus	ABC14562 ABC26678
JLOC1	JLOC1_5501.2	2807	8e-25	1935 - 1994	100	60 / 60	plus
JLOC1	JLOC1_5501.1	2880	8e-25	2008 - 2067	100	60 / 60	plus
Harvest21	ABC26678	180	3e-25	113 - 172	100	60 / 60	plus	ABC26678
Harvest35	U35_28057	180	3e-25	113 - 172	100	60 / 60	plus

Contig Sequence (180 bp)

>U35_28057 180 Hv_44K_v2
ATGTGCTGTTGGATGCTGATAGAGAAAGTGATATTCTTGGCTGGCAGTACATATCTGGGT
GTTTGCCTGATGGACATGAGCTTGGTCGTCTTGATAATCCAGAGTTCAAGGTCAAAAGTA
TGATCCAGATGGTGAATACGTAAGAACTTGGATTCCAGAGCTGGCCAGAATGCCAGGGGA

Homology of Contig U35_28057 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None