barSeed - Barley Seed Development Database

Probe CUST_18857_PI390587928

Source Contig U35_30373

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18857_PI390587928	Hv_44K_v2	TCTTTAGAGTTGTGTAATTATTGTGTTGGTTTTTTCAGTCGCTAGGGAGTTGGTGTGTTG	423	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367231	904	2e-24	770 - 829	100	60 / 60	plus	ABC21914
MLOC	MLOC_5145.2	493	7e-23	1 - 57	100	57 / 57	minus	ABC21914
JLOC1	JLOC1_3288.1	1198	8e-25	439 - 498	100	60 / 60	plus
Harvest21	ABC30273	483	3e-25	424 - 483	100	60 / 60	plus
Harvest35	U35_30373	483	3e-25	424 - 483	100	60 / 60	plus

Contig Sequence (483 bp)

>U35_30373 483 Hv_44K_v2
CTCCACCGCGCTCTCGGCGACGCGCTCTTCGGCCCCATCGCCGAGGAGGAGCCCGGCAAG
GAAGGCGAGGCCGAGGACGAGGACATGAAGGAGGCGTTCCGGGTGTTCGACGAGAACGGC
GACGGGTTCATCTCGGCGGCCGAGCTGCAGGCCGTGCTCAAGAAGCTGGGCCTGGCGGAG
GCGCGCAACCTGGCGGCGGTGCAGGAGATGATCTGCAACGTCGACCGCGACCGCGACGGC
CAAGTTGACTTCGGCGAGTTCAAGTGCATGATGCAGGGGATCACCGTGTGGGGAGCTTGA
ACTTGAAGGCGGCACGGCATGCTCCCTCTTCTGTTTCTCATATTATAAGCATCGGAGGAT
CGGAACGAGGAACAACCACAAGATCCGTAGATCGCTCCATCAGGCCCTAAAAGTGAATGT
CAGTCTTTAGAGTTGTGTAATTATTGTGTTGGTTTTTTCAGTCGCTAGGGAGTTGGTGTG
TTG

Homology of Contig U35_30373 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None