barSeed - Barley Seed Development Database

Probe CUST_18856_PI390587928

Source Contig U35_16080

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18856_PI390587928	Hv_44K_v2	CGAATAAACTTGTTGCGACTACTGAGCATATAATGCCATCATATGTGATTCTTGCAAAAA	864	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.059	1.074	2.579	1.939	0.916	0.735
Raw	9.272	280.659	539.767	634.916	105.575	92.953

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_49463.1	1925	6e-21	1779 - 1834	98	55 / 56	plus
Harvest21	ABC14663	636	3e-25	12 - 71	100	60 / 60	minus	ABC14663
Harvest35	U35_16080	936	3e-25	865 - 924	100	60 / 60	plus

Contig Sequence (936 bp)

>U35_16080 936 Hv_44K_v2
GGGACGCCTTCCTCCACCGGCTCATCGACGCCGAGCGGCGGAGGATGGAAGAGGGCGGCG
ACGAGGGCGAGAAGAAGAGCATGATTGCCGTGCTCCTCACTCTGCAAAAGACGGAGCCGG
AGCTGTACACTGATCAGATGATCATCGCTCTGTGTGCGAATATGTTTGTGGCCGGAACGG
AGACGACCTCAACCACGATAGAATGGGCGATGTCGCTGCTGCTGAACCACCCGGCGGCGC
TCAAGAAGGCCCAGGCCGAGATCGACGCGTCCATCGGGACCTCCCGCATGGTTGCCGCCG
ACGACGTGCCCCGCCTCAGCTACCTCCAGTGCATCATCAACGAGACGCTACGCATGTACC
CGGCGGCGCCGCTGCTGCTGCCGCACGAGTCCTCCGCCGACTGCAAGGTCGGCGGCTACG
ACGTGCCGAGCGGCACCATGCTGATCGTGAACGCGTACGCCATCCACAGGGACCCGGCGA
CGTGGGAGGACCCGACGGCGTTCCGGCCGGAGCGGTTCGAGGACGGCAAGGGCGACGGGC
TGCTGCTGATGCCGTTCGGGATGGGGCGGCGGAGGTGCCCCGGCGAGGCGCTGGCGCTGC
AGACGGTCGGGGTTGTTCTCGGGATGCTGGTGCAGTGCTTCGACTGGGATCGGGTGGACG
GCGTGGAGGTGGACATGACGGAGGGGGTGGGGATCACCATGCCCAAGTCCGTGGCTTTGG
AGGCCGTGTGTAGGCCGCGTGCTGCCATGCGCGATGTCCTTCACAAGCTGTGAGGATCGA
ACTTCTTGGCATAACCTATGTACATTATTAGTTTTCAAATGTAGCAACGTTCCTTATGCA
TGGTTCGATAGCGTTTTGGTGTACCGAATAAACTTGTTGCGACTACTGAGCATATAATGC
CATCATATGTGATTCTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16080 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55240.1	733	1e-127	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi1g14900.1	516	1e-124
Arabidopsis v10	AT4G37360.1	499	1e-86	\| Symbols: CYP81D2 \| cytochrome P450, family 81, subfamily D, polypeptide 2 \| chr4:17567124-17568858 REVERSE LENGTH=499