barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_18850_PI390587928Hv_44K_v2TTGAAAGGGATTTGGTCACTGCAACAATGAAGAAGAGAAGAAACTACATGCTAAAGTATT1960GeneList: saddlebrown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1810.2030.8222.3681.5371.494
Raw 54.53097.533354.6481558.691370.142386.384



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK249880.122232e-241989 - 204810060 / 60plus ABC04658 ABC35146
MLOCMLOC_77071.119702e-24692 - 75110060 / 60minus ABC04658 ABC35146
MLOCMLOC_77071.210312e-24136 - 19510060 / 60minus ABC04658 ABC35146
JLOC1JLOC1_51402.314948e-251008 - 106710060 / 60plus
JLOC1JLOC1_51402.216348e-251148 - 120710060 / 60plus
JLOC1JLOC1_51402.114148e-25645 - 70410060 / 60plus
Harvest21ABC0465822143e-251961 - 202010060 / 60plusABC04658
Harvest35U35_1608322133e-251961 - 202010060 / 60plus



Contig Sequence (2213 bp)

>U35_16083 2213 Hv_44K_v2
TGCTTGCCCGGCTTCTTCTCCTCTCTGATCCAAGCCATCCTGTGGCTTCCCCAAGCTCAC
TTCTTCTCTTGGAGGATGGAGGGGACAAAGAAGCAGGTTTTCACGATCCAGGTGGAGGAT
GGAAAGCCCGGGAAGGACGGCCGACCAGCGGTGGGGCCGGTGTTCCGGAACATACTGGCC
AAGGATGGGTTCCCGCCGCTTGATCCTGACATGAGAACCTCATGGGATGTGTTCAGAACA
GCAGCAGGGAAGTATCCAGACAACCGGATGCTTGGATGGCGTCCATTTAAAGATGGAGTG
CCAGGGCCCTACTTATGGAAATCATACAAGGATGTCTATGAGGAAGTCCTGCAAATTGGA
TCTGCACTGCAGCAGCTAGGGGTGCAGCCAGGTTCCAGGGTTGGAATTTATGGATCCAAC
TGCCCTCAATGGGTGGTAGCAATGCAGGCTTGCAATGGCTACAGCATAATATGTGTCCCA
CTATACGATACTTTAGGTGCAGGAGCTGTTGACTACATTATTGACCATGCTGAGATTGAT
GTTGTCTTCATACAAGACAAGAAAATAAAAGAAATACTGTCCCCAAATTGCACATCTGCG
ACGAGGCTAAAAGCATTGGTGGCATTCACCTCGGCAAATAATGAACAAATCAAAGATGCC
GAGCAGATTGGGATGAAAGTGTACTCCTGGAATGATTTCTTAAAAATGGGAAAGGATAAA
CCAGTTCAACCTCGTCCTCCGCAACCAAATGATACATGCACCATCATGTACACAAGTGGA
ACAAGTGGGCAACCCAAAGGTGTTATGCTGAGCCATGAGAGCCATGGGATGTATGTCAAA
GGGGTGGACCTCTTCATGGACCAGTTTGAAGATAAGATGTCGACGGAGGATGTATTTCTT
TCTTTTCTCCCACTTGCTCACATTCTCGACCGCATGATCGAAGAGTATTTCTTCCACAAA
GGAGCCTCAGTTGGCTATTACCATGGAGATTTGAATGCCTTGAGAGATGATCTAATGGAG
TTAAAGCCAACTCTACTAGTTGGAGTGCCCAGAGTGTATGAAAAGATTTATGAAGGTATT
TTAAAGGCCTTGGCGGATCTCAGACCTCTCAGGAGGGTGATTTTTAATGCTTTGTACAAC
CGCAAACTAGCAGGCATGAAAGCAGGCTACACACAAAAAACTGCTTCACCTTTCGCTGAC
ATGCTGGCTTTTCGCAAGGTCAAGGCAAGGCTTGGTGGTCGTCTTCGCCTACTAATATCC
GGTGGTGCACCCTTAAGTACTGAAATTGAAGAATTCTTGAGAGTGACCAGCTGTGCATAC
TTTATCCAAGGCTATGGTTTAACGGAAACACTGGGACCTAGCACAGTCGGTTACCCTGAT
GACATGTCCCTGGTTGGAACTGCCGGTGTTGCCGCCACCTTTACTGAACTGCGACTGGAA
GAAGTTCCCGAGATGGGTTATGATCCACTTGGCGTTCCTTCCCGTGGTGAAATCCTCATT
AGAGGGACCACTGTTTTCACTGGGTACTACAAAAATCCTGAGCTCACAAACGAGGTCATG
GTTGATGGATGGTTTCATACAGGAGACATTGGAGAGATGACCCCGGATGGAATCCTGAAG
GTTATCGACCGGAAGAAGAACATATTTAAGCTATCGCAAGGGGAGTATGTCGCAGTTGAG
TATCTGGAGAAAGTATATGTCTTCCCTCCAATTATTGAAGATATCTGGGTGTACGGGGAC
AGCTACAAATCAATGTTAGTGGCAGTAGTTAACCCACATGAAGAAAACACCATGAAGTGG
GCAGGGTCAAATGGCTACAAAGGCTCTTTCAGTGAAATATGCAAATCTGAAGGCCTTAAA
GAGCATATCCTTAAAGAGCTCGCAGCGGCTGCACAGAAGAACAAGCTACGAGGTTTCGAG
TACATCAAAGGTGTAATGTTGGACCCGGTACCTTTTGACATTGAAAGGGATTTGGTCACT
GCAACAATGAAGAAGAGAAGAAACTACATGCTAAAGTATTATCAGCCTGAGATTGATAAA
GTATACAAAACATTGGAGGGTCAGAGGGCTGCGAGCAAAGCAAAGTAAAGCTATGTGTTT
TGTTAGGTCACATGCCGGAGTACTATTGTAAATCTACTATTGAACGCTGGTAATCGAGAC
TACATAAAAGCAATAAAATGCATATTGTGTGGTTGCAAAAAAAAAAAAAAAAA



Homology of Contig U35_16083 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g04170.26700.0protein|AMP-binding enzyme, putative, expressed
Brachypodium v1_2Bradi2g38490.16710.0
Arabidopsis v10AT2G47240.16600.0| Symbols: CER8, LACS1 | AMP-dependent synthetase and ligase family protein | chr2:19393835-19397616 FORWARD LENGTH=660