barSeed - Barley Seed Development Database

Probe CUST_18844_PI390587928

Source Contig U35_15021

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18844_PI390587928	Hv_44K_v2	AGCCAAAATTGCGGTAGCCAATTTTGTCGCTATAGTTTTGGGGTGGGTCAAGGAATGATC	1762	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52687.1	2272	2e-24	185 - 244	100	60 / 60	minus	ABC02487 ABC38529
JLOC1	JLOC1_33778.1	2217	8e-25	1919 - 1978	100	60 / 60	plus
Harvest21	ABC02487	785	3e-25	170 - 229	100	60 / 60	minus	ABC02487
Harvest21	ABC02486	747	3e-25	519 - 578	100	60 / 60	plus
Harvest21	ABC02485	2062	3e-25	1788 - 1847	100	60 / 60	plus
Harvest21	ABC50080	260	1e-23	107 - 166	98	59 / 60	minus
Harvest35	U35_15021	2024	3e-25	1763 - 1822	100	60 / 60	plus

Contig Sequence (2024 bp)

>U35_15021 2024 Hv_44K_v2
GCCGCTCCGCTCTGCCAAAAGTTCTTCTTGTTCCGCAAACCACACGAAGGAAAAAAAAGC
AAAGGCGATGGCGACCTCCGACTGGACGCTCCCCGACCACCCCACGCTCCCCAAGGGGAA
GACGGTGGCCGTCGTCGTGCTCGACGGATGGGGCGAGGCCAGCCCTGACCAGTACAACTG
CATCCATGTCGCACAGACGCCCGTCATGGATTCGCTCAAGAATGGTGCTCCTGAGAAGTG
GAGACTAGTGAAGGCTCATGGAACTGCCGTTGGTCTCCCAAGTGACGACGACATGGGCAA
CAGTGAAGTTGGCCACAATGCTCTTGGAGCTGGCCGAATCTTTGCTCAAGGCGCGAAGCT
TGTTGATGCTGCTCTTGCTTCCGGGAAGATTTGGGAAGACGAGGGGTTCAATTACATCAA
GGAATCTTTCGATAAGGGTACTCTGCACCTTATTGGTTTGTTGAGTGATGGAGGCGTCCA
CTCACGGCTAGACCAAGTGCAGTTGATTGTGAAAGGTGCCAGTGAGAGGGGAGCAAAAAG
AATCCGCCTTCATATTCTTACTGATGGACGTGATGTTTTGGATGGCAGCAGTGTTGGTTT
CGTAGAGACAATTGAGAAAGATCTTGCTCAGCTTCGTGAGCAGGGTGTTGATGCACGGAT
TGCATCTGGTGGTGGAAGGATGTATGTTACCATGGACCGCTATGAGAATGACTGGAGTGT
GGTCAAGCGTGGTTGGGATGCCCAGATACTTGGAGAAGCACCATACAAATTCCAAAATGC
ACTTGAAGCTGTGAAGACTCTAAGAGCAGAGCCCAAGGCCAATGATCAGTATTTGCCCCC
CTTTGTGATTGTTGATGAGAGTGGCAAATCGGTTGGTCCTATAGTGGACGGTGATGCAGT
TGTGACTTTCAATTTCAGAGCTGATCGAATGGTTATGCTTGCGAAAGCACTTGAGTTTCC
TGATTTCGATAAATTTGACCGTGTTCGTGTACCAAAAATTAAGTACGCTGGGATGCTTCA
ATATGATGGTGAGTTGAAGCTTCCAAGCAAGTACCTTGTTTCCCCACCTTTGATTGAGAG
GACATCCGGTGAATACTTGGTGAAGAATGGTGTCCGCACCTTCGCTTGCAGTGAGACAGT
TAAGTTTGGCCATGTCACATTTTTCTGGAATGGAAACCGTTCGGGATACTTTGACGAGAC
CAAGGAAGAGTACGTAGAAATTCCCAGTGACAGTGGTATCACATTCAATGAGCAGCCCAA
AATGAAGGCACTTGAAATTGCTGAGAGAACTCGGGATGCTATCCTCAGTGGGAAGTTTGA
CCAGGTGCGTATTAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGC
CACAGTTGTTGCTTGCAAGGCTGCTGATGAAGCTGTCAAGATGGTCTTGGATGCTGTGGA
GCAAGTTGGTGGTATCTATCTTGTCACAGCTGATCATGGAAACGCAGAGGATATGGTTAA
GAGGAACAAAGCTGGCCAGCCGATGCTCGACAAGAGCGGTAGCATCCAGATTCTTACCTC
GCACACACTTCAGCCTGTCCCTGTTGCTATCGGAGGCCCTGGTCTCCACCCAGGAGTGAG
ATTCCGCTCTGACATCCAGACACCCGGGCTCGCCAACGTTGCCGCCACGGTGATGAACCT
CCATGGCTTCCAGGCTCCTGCCGATTACGAGACGACCCTCATCGAAGTCGTCGACAAGTA
AAAAAACCACTGCGCTCTCTGAAGCCAAAATTGCGGTAGCCAATTTTGTCGCTATAGTTT
TGGGGTGGGTCAAGGAATGATCGCATCATTGAATAATTTGAGATTTGCCAGCACGCTTGC
TCAAAACTCATGTGTAACATTGAGAAAGGTGGATTTTACTTGCAGTTAGCTCTATTTTGT
AACTTGGGTTGCCACGCGGGTTGGCTTAACAGACAGATAGCGTTTTTTGCTAATCTATAT
GCATGGGATTTCATCTTGAGTTAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15021 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g60190.2	560	protein\|2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed
Brachypodium v1_2	Bradi2g53340.3	560
Arabidopsis v10	AT3G08590.1	560	Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent \| chr3:2608683-2611237 REVERSE LENGTH=560