barSeed - Barley Seed Development Database

Probe CUST_18842_PI390587928

Source Contig U35_15023

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18842_PI390587928	Hv_44K_v2	TTCCGTGAGCATTCTTTTTGTTTGCCAATAATTGTAAACGACGTTTGACGTGCTAAAAAA	1045	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364202	1095	3e-21	1042 - 1095	100	54 / 54	plus	ABC02742 ABC36788
JLOC1	JLOC1_3021.1	959	1e-22	794 - 849	100	56 / 56	plus
Harvest21	ABC36788	281	3e-25	12 - 71	100	60 / 60	minus	ABC36788
Harvest21	ABC02742	1138	5e-23	1038 - 1093	100	56 / 56	plus	ABC02742
Harvest35	U35_15023	1174	3e-25	1046 - 1105	100	60 / 60	plus

Contig Sequence (1174 bp)

>U35_15023 1174 Hv_44K_v2
GGTCGACACCTCCCCCAAATCGAAGCGAGGCCTAAAACCCTAGAGAAGCCCCCGGCACCG
CCCCGCCTCGCCGCCGCACCGGATCTCGCCGCCGTCGCCGTAGCCGTCGCCATGGACATG
GCAGCGATGAACGACCCGGAGAGGCTCTTCTTCTTCGACCTCGCCTGCAAGACCGCCAAG
GCCACCTACGACGAGAACCCGCTCGACGCCGACAACCTGACGCGATGGGGCGGCGCTCTG
CTGGAGCTGTCGCAGATGCATAACGGCCCGGAGAGCCTCAAGTGCCTCGAAGATGCGGAG
TCTAAGCTGGATGAAGCACTGAGAATTGATCCCAACAAGGCTGATGCACTCTGGTGCTTG
GGGAATGCCCTGACCTCTCGTGGATTCTTCACTTCGGAAACTGTCCAGGCTAATGAATGC
TTTGAAAAAGCAACTGGTTGTTTCCAGAGGGCTGTTGATGTGGAACCAGCAAATGAGTTG
TACAGGAAGTCATTGGATTTGTCATCAAAGGCACCTGAACTGCATTTGGAGATCCATAGG
CAAATCGCATCTCAAGCCTCACAAGGAGCACCCTCGTCCTCAAATGCAAGGCAATCAAGG
AAAAAGAAGAAGAACAATGACTTCTGGTATGATGTGGCTGGATGGGGGATTCTTGTCGTT
GGCATCGGTATTTGGGTAATAGCGGCCAACAGTCAACCCAAGGTTGAACTTCCGGCACAA
GCACCTCACATGTCACAGCCTTCCATGTGATTCAAGATGATGCTTGGAAGAAAGGAAACC
TGCAAATGGCATGCCTATTGTTAGGACTTAGCAAAGTTATGGAGAGGAAATGGTGTTTCC
ATGTTGCGGTTTTTGTCAATTTTTTCGACATGCGGCGACCTTGATGCGGTTTATCTTGTC
AAAGGACATAAGGCGCTTGATATGCTTCCTTACGTGCTTCTCTTACTATTAGCGAGAACC
AATTGCTGTGTTTTTTGTATGGTCTTTTTCACATGTCTACATAATATTGGGTACTGGATC
TGCTCTTGAGCGGCATATACTTGCTTTCCGTGAGCATTCTTTTTGTTTGCCAATAATTGT
AAACGACGTTTGACGTGCTAAAAAAAAAAAAAAAAACTCTTGGGGTTCTGTTTGCCTATT
TTTTGCGGGCATTTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15023 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g69250.1	203	9e-87	protein\|mitochondrial import receptor subunit TOM20, putative, expressed
Brachypodium v1_2	Bradi2g59080.1	205	1e-88
Arabidopsis v10	None