barSeed - Barley Seed Development Database

Probe CUST_18837_PI390587928

Source Contig U35_27000

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18837_PI390587928	Hv_44K_v2	TGCAGATGCTTAGTAGTAGTGCACTGCACGTGCACTAAAATGTTACCCAGGACTAAAAAA	517	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5253.2	3741	2e-24	3659 - 3718	100	60 / 60	plus	None
MLOC	MLOC_5253.1	3544	2e-24	3433 - 3492	100	60 / 60	plus	None
JLOC1	JLOC1_3373.2	3528	8e-25	3340 - 3399	100	60 / 60	plus
JLOC1	JLOC1_3373.1	3565	8e-25	3377 - 3436	100	60 / 60	plus
Harvest21	ABC50249	599	3e-25	24 - 83	100	60 / 60	minus
Harvest35	U35_27000	607	3e-25	518 - 577	100	60 / 60	plus

Contig Sequence (607 bp)

>U35_27000 607 Hv_44K_v2
AGTTCAAGCAGGAGAAAGAGGTCGCCAGCGCTGCAGGGAAGCTCGCAGAGTGCCAGAAGA
CGATCGCCAACCTCGGGCTTCAGCTGAAATCGCTGACGGACCTCGACAGCGTGATGACCG
AGCCTGACAAGCTGGAATCAAAGGACAGGCTGCTGGACTTCAGAGAAGACGGCACTTCGC
CGGTCGCCGATGAATCGTATGGTCTGGATCTCCCAAGGAGCAACGGGGGCTGCGTCTCGC
CCGTTCCTCTGGCCCAGTCCCCGTCGTCGCGGCGCTCGGTGTTCTCGGGGGGTTTATCGT
CTATGGGTAGCTACAGGAGCAGGGCAAGGAAGTGAGATGTGATGTAAGAGATTGTGCATA
GGTTATCTAACTGTTCCTGGATGTTGTTGTGAGCTCAGTTGTCACCTGGGGGTAGATTCG
GTGTGCGTTTACAGGAAGTTGACGGTCCGCTTTTGGATTTGTGCTCTCTGTCATTTTCGG
TCCTGTCTGTCATTTAGATGATCGGTGTTTCGCTAGATGCAGATGCTTAGTAGTAGTGCA
CTGCACGTGCACTAAAATGTTACCCAGGACTAAAAAAAAAGACCTTCAGCAAAAAAAAAA
AAAAAAA

Homology of Contig U35_27000 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None