barSeed - Barley Seed Development Database

Probe CUST_18831_PI390587928

Source Contig U35_15030

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18831_PI390587928	Hv_44K_v2	TCGTTCAGATTCACAGGTTTTCCTCTTTGCCAACTCAAAATGCAAGCGCTACTTCCACAA	202	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.475	0.527	1.022	1.301	0.997	1.374
Raw	9904.767	16440.973	29219.067	58130.733	15650.500	23816.000

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74010.1	920	2e-24	474 - 533	100	60 / 60	minus	ABC02371 ABC02373 ABC02375 ABC34560 ABC51541
JLOC1	JLOC1_49303.1	949	8e-25	195 - 254	100	60 / 60	plus
Harvest21	ABC34560	644	3e-25	582 - 641	100	60 / 60	minus	ABC34560
Harvest21	ABC30077	586	3e-25	128 - 187	100	60 / 60	plus
Harvest21	ABC02374	408	3e-25	203 - 262	100	60 / 60	plus
Harvest21	ABC02372	781	3e-25	144 - 203	100	60 / 60	plus
Harvest21	ABC02371	747	3e-25	12 - 71	100	60 / 60	plus	ABC02371
Harvest35	U35_30260	586	3e-25	128 - 187	100	60 / 60	plus
Harvest35	U35_15032	886	3e-25	157 - 216	100	60 / 60	plus
Harvest35	U35_15030	336	3e-25	203 - 262	100	60 / 60	plus

Contig Sequence (336 bp)

>U35_15030 336 Hv_44K_v2
GGCCGCGCAGCTCGTCCACCAGTTCTTCCGTTCGTTTCGCAAGGTCTGGTTGGTCTGGAT
CCCGATGATAGGCCGCCGCGTCCTTCGGTTCGTAGCGTAGGAGCTTGTGAAAGTTCTCCA
AGGCTGAGAAGATGGTTCTGAAGACTGAGCTTTGCCGTTTTAGCGGCCAGAAGATTTACC
CAGGGAAGGGTATCAGGTTCATTCGTTCAGATTCACAGGTTTTCCTCTTTGCCAACTCAA
AATGCAAGCGCTACTTCCACAACCGCCTGAAGCCTGCAAAGCTTTGCTGGACAGCAATGT
ACAGGAAGCAGCACAAGAAGGACATCCATGCTGAGG

Homology of Contig U35_15030 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None