barSeed - Barley Seed Development Database

Probe CUST_18830_PI390587928

Source Contig U35_15031

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18830_PI390587928	Hv_44K_v2	TAATCATCGATGCGGAGCATGGCCGTCATAATGTGACCTTGAGCTGGTTATTAATTCAAA	874	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.657	1.673	1.072	0.869	0.511	0.515
Raw	1207.870	1166.900	667.417	843.255	173.522	193.538

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_11575.1	927	3e-24	826 - 884	100	59 / 59	plus
Harvest35	U35_15031	948	3e-25	875 - 934	100	60 / 60	plus

Contig Sequence (948 bp)

>U35_15031 948 Hv_44K_v2
GGGCTGCGGGAGCAGAGCAGGAGAGCGGCAGCTCGCGCGCGCGCGCCCCCAATCCCTGCC
GCAGCCGGAGCCCGCCGCTTGCATCCCAAGGAGGAGCTTTGAAGGTTTGTCAGGGCGGAC
AAGATGGTTCTGAAGACAGAGCTCTGCCGTTTCAGTGGTGCCAAGATATACCCCGGGAAG
GGTATCAGATTCATCCGTTCAGACTCTCAAGTCTTCCTTTTCTCCAACTCAAAGTGCAAG
CGCTACTTCCACAACCGTCTCAGGCCTGCTAAGCTCACATGGACGGCCATGTTCAGGAAG
CAGCACAAGAAGGATATTCATGCTGAGGCTGCAAAGAAGAGACGCCGCACCACCAAGAGG
CCGTATTCCAGGTCAATTGTAGGTGCTTCGCTTGAAGTTATCCAGAAGAAGAGAGCTGAG
AAGCCGGAGGTCCGTGATGCAGCAAGGGAAGCAGCTCTACGTGAGATCAAGGAACGCATC
AAGAAGACCAAGGATGAGAAGAGAGCTAAGAAGGTGGAGGTGACGAAATCCCAGAAGACT
GCCGGAAGAGGCAATGCCCCCAAACCCGGGAAGGCCCCTAAGCTTGGCGGTGGCGGCGGG
AAGCGCTAGATGACGTTGCTGCCGATCAGCGTTAAATTTTGAACTAGTTACATGATGTCT
TACCCCGTATCTTTAGGAAGTTTTTTGCCCAAACCTGCTGGTGCTGTTGGTATGCAGCAT
CTGGGTCACAATCAGTGTGAAGATTGTTTTATTTTTATCTGATCAATGTGAAGATTGTTT
TATGCTTAAAAAAAAAAAAAATCTTTCGCGCCACATTGTGGATGTTTGTTTGTTGTCTTC
GTGAAACCTCTCTCACACCTTTGTAACTGGATGTTAATCATCGATGCGGAGCATGGCCGT
CATAATGTGACCTTGAGCTGGTTATTAATTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15031 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g40820.1	162	5e-79	protein\|ribosomal protein L24, putative, expressed
Brachypodium v1_2	Bradi1g04160.1	162	3e-81
Arabidopsis v10	AT3G53020.1	163	7e-71	\| Symbols: STV1, RPL24B, RPL24 \| Ribosomal protein L24e family protein \| chr3:19660749-19661912 REVERSE LENGTH=163