barSeed - Barley Seed Development Database

Probe CUST_1882_PI390587928

Source Contig U35_2784

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1882_PI390587928	Hv_44K_v2	GTATGCCTGTTAAACTGCTTACAGGATGAATGTCATTCAGGTTCAGACTATGCTGTCAAA	2235	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.593	1.685	1.021	0.826	0.355	0.392
Raw	4979.810	8114.107	4352.753	5584.753	841.021	1013.198

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22004.1	3251	7e-23	3195 - 3251	100	57 / 57	plus	ABC06485 ABC40859
MLOC	MLOC_22004.3	3718	7e-23	3505 - 3561	100	57 / 57	plus	ABC06485 ABC40859
JLOC1	JLOC1_15255.2	1838	4e-23	1757 - 1813	100	57 / 57	plus
Harvest35	U35_2784	2309	3e-25	2236 - 2295	100	60 / 60	plus

Contig Sequence (2309 bp)

>U35_2784 2309 Hv_44K_v2
TTGATGGGCGCGGCGCTGTTTTTGCGGTGATTTTGTCGTTGTTTGTTCCCCCGACCCGCC
CCGTGGAGCGGCCATGGTGAAGACCCCCACTAGCACCCCCAAGGCCAAGGCCAAGGCCAA
GGCGGCCTCTTCCGGCAGTGCTGCCCGGCCGTCCCCGGCGGGCGCTTCCGGCTCTGGCTC
GGCGAAGGCGTCGAAGTTTAAGAAACGGAAAGCCGTTGGCACCGGTGCGAAGGTCGCGGC
CACTGCTGCGGCAGCGGCCGATGGGGCGGCCTCCGCGGTCGCTGCCGGCAGGGACGACCC
TGCCCCTGCATCTGCGCCGAAACGGTCCACCCCTTCTGGAGGGTCGCCTGCGGCATCTTT
GAAGCCAGCCACCGTGGCTGAAGGATCGTCTGCTGCCCAGGTACCGGCACCAAAGCCAGA
CACCGCTGAAGAAGCATCAGCGTCGACTCCAAAACCGAAGCCAAAGCCAAAGCCAAAGCC
AAAGCCGGCTGATGCTGCAGCTGCCACCAGCAATGGGGCGGGTGCTAGCGGTAGTGGTGG
TAGCAAGAAGAAGAACAAGAAGGGGCATAAGGAGAGGCTTATGGCTTGGAAGGGAAAGGG
GAAGCAGGAGGAGGCACAGGGGAATAAGAAGGGGACGGTGAAGGAGGAGGGAGCCAAGAA
AGAAGGGGGTGGTGGTGATAGCAGGGGAGGAGGGCTTATCTTCATGTGCAATGCACAGAC
TAAGCCGGAGTGCTTCAAGAACCGCGTGTTTGGCATGCCCATGGGGAAGAAGGAGATGGT
GGAGAAGGTCCGACCAGGGACAAAGGTATTCCTGTATGATTTCGACTTGAGGCTGCTATA
TGGGGTGTACAAGGCGACATCAAAGGGCGGGATAAACCTTGTCAGAAATGTATTTAACGG
GAAGTTTCCTGCTCAGGTGAGATTTACGACTGATAGAGATTGCCTTCCTCTTCCTGAGAG
TAGTTTCAAGCATGCCATCAAAGAGAACTACAGTGCAAGCCGCAAATTCGACCCTGAGAT
CACCTCTACACAAGTTCGTAGGCTGATGGCTCTATTCAAGCCTAGCACTGTACACCAATC
AGCTCTAAGGGGTCATCTAGATGAAAGGTACGGCCATGAAGAAAGTAGGCATCAACATGA
AGATAGGCCACATCCATTGCATGTTGAAGACAGGCGCCCGCAGGTGGTTGTACATGTTCC
TCCTCCTGAGGACTCATATAGGGCAACACACTTTGCTCCATTTCCTACCGAGTCCCGACC
TGGTCAATTTGTCCAGGATGATCACATATATTATCAACAAGCGCCTCCTGCACCCGAGTC
TCAACACATTCCTCTTGCCCCAGAGCCTCGCCATGTTCCTCTTGCCGCAGGGCCTCACTA
TATGCCTTCTGTACCAGAGCCTCGGCATGTCCCATCAGCGTATTACCACCATTTGGCTCC
TTCATCTGATGATTCTTACTACCGTTCTCGAGTGGATCCAGTGCATGAGCGCGTTGCTGC
CAGAACACCTCCAAGGGATTACGCAGCGCCGCTGGGGGAGTTGGCTGCTCGTGCTGACCA
TATGACGGAGCTCTACCGGACCACTGTTCGTGATGCTCGCCTGGAGGATCCTTACCGCCC
AGGAGAGCTTGCTGTCCGTGGTACTCGTGTGGAGGATCACTACCGTCCAGGAGAGATTGC
TTCTCACGGTGCTCGTGTGGAGGATCTCTACCGCCCAGGAGAGATTGCTTCTCGTGGTGC
TCGTGTGGAGGATCTCTACCGTCCAGGAGAGATTGCTGCTCGTGGTGCTCGTATGGAGGA
TCTCTACCGTCCAGGAGACGTTGCTGCTCGTGATGCTCGTATGGAGGATCCCTACCGTCA
AGGAGGGCTAGATGCTCGTGGTTCTTATGGGGGGCTCTACCGTTCTGACCAGCGAGTCGC
TCGTGCCGTGGATCTCCCACATTCTTATGAGACCTCCAACCCTGCTTATGCTGAAACCAG
TCAGAGACCTCTCCCTGCTGCAAGGACGAATGGACCAGGTGTGCCGGTTTCCTCACTCTA
TTCCTTTGCTGGAGCGCCAGCATATCGATGATTTTTCTCAGCATTTAACATGCCGTGCCT
CGAGTCGGTTGTACTGCCAGTCAGCATCGTCTTATGTTTACTTTTGGTTAAAACTATAGC
AGTCAGCCTCGTTGGATGTTTACTTTGGTTAAAACTATAGCGTAACTGAAGTCGGGATTT
TTTTTCTCTTATCTTGTATGCCTGTTAAACTGCTTACAGGATGAATGTCATTCAGGTTCA
GACTATGCTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2784 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g12260.1	705	9e-146	protein\|N-rich protein, putative, expressed
Brachypodium v1_2	Bradi3g59360.1	516	1e-62
Arabidopsis v10	None