barSeed - Barley Seed Development Database

Probe CUST_18824_PI390587928

Source Contig U35_15037

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18824_PI390587928	Hv_44K_v2	TGACTTGGTCACTCATTTTGCTCTGAAATGAAGCATGGTGTGTTTTACTGTTTCAAAAAA	542	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370024	599	3e-21	545 - 598	100	54 / 54	plus	ABC02448 ABC02449 ABC02450 ABC02452
JLOC1	JLOC1_51893.1	490	2e-21	285 - 338	100	54 / 54	plus
Harvest21	ABC02449	613	3e-25	543 - 602	100	60 / 60	plus	ABC02449
Harvest35	U35_15037	613	3e-25	543 - 602	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_15037 613 Hv_44K_v2
GGTCACCTCCTCCCCACACCCCGCCACCACCACCTTCCTCGGCCACCGGCGGCGGCGACA
ATGGTGCAGGGACGCCAGGGCCAGCGCGTCCGGCTATACGTGCGGGGCACCATCCTGGGC
TTCAAGAGGTCCAAGTCGAACCAGTACGAGAACACGTCGCTGCTGCAGGTGGAGGGGGTG
AGCACCAAGGAGGACGTGTCCTACTACGCCGGCAAGCGCATCGCCTACGTCTACAAGGCC
AAGACCAGGAGCAGCGGCACCACCTTCCGCTGCATCTGGGGCAAGGTCACGCGCCCCCAC
GGCAACTCCGGCGTCGTCCGCGCGCAGTTCCGGTCCAACCTCCCCGCTACCTCCATGGGC
AAGAAGGTCCGCGTCTTCATGTACCCCAGCAGCACCTAAGGGTATGTTCCTATTCTATTT
AGTTGTAGCTGGATTCGTGGATGTCTGATATCAGTTTTGACAGCCAGTTGATAAACTCAA
AGATTTTCCTGGCGATTTTGGAAGACCTTAGTTACAGACTGTTACTTTCATCTCGTGTAA
CTTGACTTGGTCACTCATTTTGCTCTGAAATGAAGCATGGTGTGTTTTACTGTTTCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_15037 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48310.1	112	1e-64	protein\|60S ribosomal protein L35a-3, putative, expressed
Brachypodium v1_2	Bradi2g17180.1	113	2e-70
Arabidopsis v10	AT1G07070.1	112	2e-59	Ribosomal protein L35Ae family protein \| chr1:2168652-2169703 FORWARD LENGTH=112