barSeed - Barley Seed Development Database

Probe CUST_18823_PI390587928

Source Contig U35_15038

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18823_PI390587928	Hv_44K_v2	GGACCATTTTAGTATTTCTATATCAGCACTAAAGCGTAATCTCATGAGTTCTTGACTGTT	588	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359461	755	2e-24	593 - 652	100	60 / 60	plus	ABC02448 ABC02449 ABC02450 ABC02452
JLOC1	JLOC1_16042.1	906	8e-25	521 - 580	100	60 / 60	plus
Harvest21	ABC31191	563	3e-25	450 - 509	100	60 / 60	plus
Harvest35	U35_38623	538	3e-25	21 - 80	100	60 / 60	minus
Harvest35	U35_36566	562	3e-25	63 - 122	100	60 / 60	minus
Harvest35	U35_15038	701	3e-25	589 - 648	100	60 / 60	plus

Contig Sequence (701 bp)

>U35_15038 701 Hv_44K_v2
TCGCGCTCGCCCACACGAAGCCCCCACCCCAACCCCCGAGCCCCTCGTCTCCGGCGGCGG
TAGGAAGAAGCAGCAGCGGCGGCAGCAGCAATGGTGAAGGGACGCACGGGGCAGCGCGTC
AGGCTCTACGTCAGGGGCACCATCCTCGGCTTCAAGAGGTCCAAGTCGAACCAGTACGAG
AACACGTCGCTGGTGCAGATCGAGGGGGTGAACACCAAGGAGGACGTGGCGTGGTACGGC
GGCAAGCGCCTGGCGTACGTGTACAAGGCCAAGACCAAGAGCAACGGCACCCACTACCGC
TGCCTCTGGGGCAAGATCACCCGCCCGCACGGCAACTCCGGCGTCGTCCGCGCCCAGTTC
AAGTCCAACCTCCCCGCCGAGTCCATGGGGCGCAAGGTCAGGGTGTTCATGTACCCGAGC
AGCATCTAAGGTTAATTCGAGCTAGGGCCAGTAATGCTTGTTTCTTGCGATTGTCATGAG
CTGAGAAATGTCATTTTATGGTGAATCGAATCTATGTTGGTGACTGAAACTGTTCATGTA
TTCGGAGAACCTGTGGAAGTTTTGGCTAGACTTGTTTGTCAAATGTGCGGACCATTTTAG
TATTTCTATATCAGCACTAAAGCGTAATCTCATGAGTTCTTGACTGTTGCAAAAAAAAAA
AAAAAAAACTTCATGAGTTCTTGACTGTTTTGCAATGTTTG

Homology of Contig U35_15038 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54470.1	113	2e-69	protein\|60S ribosomal protein L35a-3, putative, expressed
Brachypodium v1_2	Bradi4g16690.3	113	4e-73
Arabidopsis v10	AT1G74270.1	112	3e-64	Ribosomal protein L35Ae family protein \| chr1:27928415-27929466 REVERSE LENGTH=112