barSeed - Barley Seed Development Database

Probe CUST_18802_PI390587928

Source Contig U35_15041

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18802_PI390587928	Hv_44K_v2	AAGGATGTTCCCGGTGACATTTTTAAATGTAAGAAGCAAGGAAGAAATGAGTTTGTCATA	1246	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.976	1.550	0.955	0.903	0.302	0.360
Raw	295.316	351.050	197.571	311.345	34.712	45.225

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359655	1898	2e-24	1262 - 1321	100	60 / 60	plus	ABC03308 ABC03309
MLOC	MLOC_7841.1	1178	2e-24	455 - 514	100	60 / 60	plus	ABC03308 ABC03309
JLOC1	JLOC1_5185.1	1304	8e-25	462 - 521	100	60 / 60	plus
Harvest21	ABC03308	1874	3e-25	1247 - 1306	100	60 / 60	plus	ABC03308
Harvest35	U35_15041	1865	3e-25	1247 - 1306	100	60 / 60	plus

Contig Sequence (1865 bp)

>U35_15041 1865 Hv_44K_v2
GCGCCACCCCCCTCCCCCCTCCCCACTCCCATCCACCCAGCATCCCAGCAGTAACTCTCC
CCCCTCCGCCCCTCCCACGCGGCGCGCGCGCGAATCTCGATCGCCACTGGTGTACTGTTG
AAGGGAGAAGAGAATCATCCTATTCGTCATGGCGGGAACTGACTCCTCGGCGTCATCGAG
ACAAAGCAGTTTTAACTCATTAGCAAAGGATCTAGAACTTCCTTTGGAGCAAGGGTGCCT
GACTATCGTTGTACTTGGGGCTTCTGGAGACCTTGCCAAGAAGAAAACGTTCCCGGCACT
CTACCACCTTTTTGAACAGGGGTTCTTACAATCTGGTGAAGTGCATATAGTTGGGTATGC
GAGAACAAATCTTTCTGATGATGGGTTGAGAGGGCGCATCCGTGCATACCTTAAAGGAGC
CTCAGAGGAGCATGTTTCAGAATTCTTGCAATTGATAAAATATGTCAGTGGCTCCTATGA
CAGTGGAGAAGGTTTTGAAAAACTGAACAAGGAAATATCAGATTATGAGATGTCAAACAA
CTCAGGAAGCTCCCGTAGGCTCTTTTACTTGGCATTGCCTCCATCTGTCTACCCTTCAGT
GTGCAAAATGATCCGAACATATTGCATGAGTCCAACTTCTCGCACTGGATGGACTAGAGT
AATTGTTGAGAAGCCCTTTGGAAGGGACCTGGACTCAGCAGAAGAATTAAGTTCCCAACT
TGGGGAGCTATTCCAGGAAGATCAACTCTACAGGATTGACCACTACTTGGGAAAAGAGTT
GGTCCAAAACTTGCTTGTGCTTCGTTTTGCGAACCGTTTGTTCTTACCACTTTGGAACCG
TGACAATGTTGATAATATACAGATTGTATTCAGGGAGGACTTCGGAACTGATGGGCGTGG
AGGATATTTTGATCAATATGGAATCATCCGTGATATCATTCAGAACCATTTGTTGCAGGT
TTTCTGTTTGGTTGCAATGGAAAAGCCTGTATCTCTTAAGCCTGAGCACATTAGAGATGA
GAAAGTCAAGGTTCTGCAATCTGTGAACCCGATAAAGGACGAAGAGGTAGTCCTTGGACA
ATATCAGGGCTACAAGGATGACCCTACAGTGCCAGATGACTCTAATACCCCAACGTTTGC
ATCTATTGTACTTAGGGTACACAATGAAAGATGGGAAGGTGTCCCTTTCATTCTTAAAGC
TGGTAAAGCATTAAACTCAAGAAAAGCAGAAATTCGTGTGCAGTTCAAGGATGTTCCCGG
TGACATTTTTAAATGTAAGAAGCAAGGAAGAAATGAGTTTGTCATACGCCTCCAGCCATC
AGAAGCCATGTATATGAAACTAACTGTGAAGAAACCTGGATTGGAAATGGCTACTGAACA
GAGTGAACTTGATCTGTCATATGGGATGCGTTACCAAGATGTCAAAATTCCAGAGGCATA
CGAGCGCCTCATTTTGGATACAATAAGAGGAGACCAGCAACACTTTGTGCGCCGGGATGA
GCTGAAGGCTGCCTGGCAGATCTTCACTCCCTTGTTGCACAACATCGACGCTGGCAAGCT
GAAGGCTGTTTCATACAAGCCTGGCAGCCGTGGCCCCAAGGAAGCTGATGAACTGAGTGA
GAAGGTTGGGTACATGCAGACCCACGGTTACATCTGGATACCACCCACCCTTGCATAGAG
TGCCTCTCTCGATCCTTCTAGGTTGTTTAGCTAGGAAGAGTGAAGGTATCACGGATAAAA
ATCTTACGAATTTTCGCTGTACCGTGGTTTACCTGGCGTTGTAATAACGGATCTGTTTGG
CGGAGTATACCTCACCACGGTGTGAAATAAAAAATTTGAGTGTTTCAAAAAAAAAAAAAA
AAAAA

Homology of Contig U35_15041 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g38840.2	518	protein\|glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed
Brachypodium v1_2	Bradi5g13860.3	511
Arabidopsis v10	AT5G40760.1	515	\| Symbols: G6PD6 \| glucose-6-phosphate dehydrogenase 6 \| chr5:16311284-16314556 FORWARD LENGTH=515