barSeed - Barley Seed Development Database

Probe CUST_187_PI415269222

Source Contig TA46603_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_187_PI415269222	Hv_44K_v2	CCTAGATCCACACATACATAGTAATCATTTTTTCTACACGATCATGTACCTGTACATTAC	1166	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367064	1330	2e-24	1095 - 1154	100	60 / 60	plus	ABC17609
MLOC	MLOC_55942.2	1745	7e-23	1516 - 1575	98	59 / 60	plus	ABC17609
MLOC	MLOC_55942.1	1410	7e-23	1119 - 1178	98	59 / 60	plus	ABC17609
JLOC1	JLOC1_36128.2	1301	4e-23	1042 - 1101	98	59 / 60	plus
JLOC1	JLOC1_36128.1	1405	4e-23	1146 - 1205	98	59 / 60	plus
Harvest21	ABC17609	1321	1e-23	116 - 175	98	59 / 60	minus	ABC17609
Harvest35	U35_6928	1332	3e-25	1158 - 1217	100	60 / 60	plus

Contig Sequence (1252 bp)

>TA46603_4513 1252 Hv_44K_v2
CGGCACGAGGCGTCTGAGAGATCGGCGCACGGCGCCCCGTATAACAAACCAGTCGCACGC
TCGCTCGCTCGCTCGTCATGAATTTCAGCGGCCATTCCACGACCGCCCAGAGAAGACGCG
CCTCCTCCCTCTCCTCCGTCCTCGTCGTCTCCCCTCTCGCGCTTCCCCCCAACCCAGCCA
ACACGTTGACACGCAGACACGCTTCGCCGGGCGCGAGCGGCATCGGCGAGCCATGAAGGG
CGGCGGAGCCATCCGGAGCGGCGGCGGCGGCGGCGGGCTGATGCGGACGCGGCTGCGGCT
CCCCGTGGTGCTCCTCTCCTGCTCCCTCTTCTTCCTCGCCGGCTTCCTCGGCTCCCTCCT
CTTCACCCAGGATCCGCAGGGCGAGGAGGACCCGGAGCGGCCACTGCGGAGGGAGCGGGT
CATGGAGGCCGTCTGGCCGGAGATGGCGTACGGGGAGTCCGGCGACCCCGCGCCCTCCTT
GATCCCTTACCAGATTTTGAGCTGGCAACCTCGTGCATTATATTTTCCACAGTTTGCAAC
AGCAGAACAGTGTGAGAATGTAGTAAAAACTGCAAAGGCACGGCTTAGGCCATCAACATT
GGCCTTAAGGAAAGGAGAAAGCGAGGAGACTACCAAAGGAATAAGGACAAGCTCAGGCAC
ATTCCTTAGTGCCGAAGAAGATCCAACTGGAGCCCTTGCAGAAATTGAAACGAAGATTGC
AAAGGCTACCATGATGCCGAGAAGTCATGGAGAGCCCTTTAATGTCCTTCGGTATGAGAT
TGGACAGAAGTATGCTTCACACTATGATGCGTTCGACCCGGCTCAGTATGGTCCACAAAA
AAGCCAAAGAGTGGCATCTTTCTTGCTCTATCTCACGGATGTCGAAGAAGGTGGAGAAAC
CATGTTCCCTTATGAGAATGGGGATAATATGAACATAGGCTACGACTACGAACAGTGCAT
CGGCTTAAAAGTAAAACCGAGGAAGGGTGATGGCCTCTTGTTTTACTCCCTTATGGTAAA
CGGTACCATTGATCCGACTTCACTTCATGGAAGCTGCCCAGTGGTCAGAGGAGAGAAATG
GGTCGCCACAAAATGGATTAGAGACAAGTCGGTGTAAAATCGGTGTAAATGAGGCTAACA
AACAGAAGCTCCACGTCCTAAATACTCCTAGATCCACACATACATAGTAATCATTTTTTC
TACACGATCATGTACCTGTACATTACATTTATTCGATTTGCAACTATCTGCT

Homology of Contig TA46603_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55380.1	311	4e-161	protein\|oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi1g07820.1	209	2e-139
Arabidopsis v10	AT4G33910.1	288	4e-119	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr4:16256943-16258614 REVERSE LENGTH=288