barSeed - Barley Seed Development Database

Probe CUST_18799_PI390587928

Source Contig U35_15044

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18799_PI390587928	Hv_44K_v2	ATAAAAATCCCAGAAGCATACGAGCGTCTTATCTTGGACACGATAAGAGGTGACCAGCAG	719	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53804.2	1280	2e-24	450 - 509	100	60 / 60	minus	ABC03309
MLOC	MLOC_53804.1	1323	2e-24	509 - 568	100	60 / 60	minus	ABC03308 ABC03309
JLOC1	JLOC1_34591.1	1231	8e-25	672 - 731	100	60 / 60	plus
Harvest21	ABC03309	1176	3e-25	398 - 457	100	60 / 60	minus	ABC03309
Harvest35	U35_15044	1176	3e-25	720 - 779	100	60 / 60	plus

Contig Sequence (1176 bp)

>U35_15044 1176 Hv_44K_v2
GGGGAATTGAGTGCCCAACTTGGAGAGCTTTTCGATGAAGAAAACTATATAGAATTGACC
ACTATTTAGGAAAGGAGTTAGTCCAAAACTTGCTGGTGCTTCGCTTTGCAAATCGCTTCT
TTCTGCCCCTCTGGAATCGTGATAACATTGATAACGTACAGATTGTATTCCGGGAGGACT
TTGGAACTGATGGACGTGGAGGATATTTTGATCAATATGGTATCATTCGGGATATTATTC
AGAACCATTTGCTGCAGGTCTTTTGTTTGGTAGCCATGGAAAAGCCTGTCTCTCTTAGTC
CTGAGCACATACGAGATGAGAAAGTCAAGGTTCTGCAATCAGTGAGCTCTATAAAGCATG
ACGAGGTAGTCCTTGGGCAATATGATGGCTACAAGGATGATCCAACAGTGCCAAATGAAT
CCAACACACCTACTTTTGCATCCGTTGTGCTGAGGGTACACAATGAGAGATGGGATGGAG
TTCCTTTCGTCCTTAAGGCTGGTAAAGCACTAAGCTCTAAGAAAGCAGAGATACGTGTGC
AGTTCAAGGATGCTCCAGGCGATATTTTTAGATGCAAGAAACAAGGAAGAAATGAATTTG
TCATACGCCTGCAGCCATCGGAAGCCATGTATATGAAATTAACTGTAAAGAAACCAGGGC
TCGAAATGGCAACAGAACAAAGCGAGCTGGATTTATCCTACGGGCTACGGTACCAAGATA
TAAAAATCCCAGAAGCATACGAGCGTCTTATCTTGGACACGATAAGAGGTGACCAGCAGC
ACTTTGTTCGCCGAGACGAGCTGAAGGCTGCCTGGCAGATCTTCACTCCCTTGTTGCACG
ACATCGATAGTGGCAGGTTCAAGGCTCTACCATACCAACCGGGAACCCGGGGTCCTCCGG
AGGCCGATGAGTTGAGCAAGAGGATGGGGTACGTGCCGACTCTTGGCTATGTCTGGGCAC
CACCAACCCTTGCAAAGTTTTAGCCGCTACCAAGTGCCGGTTAAGAACAGGAGTGTTCTG
GGTTTACAGAGAATTACTTCAGAGGGAAATTACTTGCTCTGTGTGTTATATACGGAAGAG
CATTTGTAATAAGCAATCTGTGCTTTTCAAAACAGTATACCATTTTACGATTACAAATAA
ATGAAACTTAGTGATTATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15044 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g38840.2	518	0.0	protein\|glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed
Brachypodium v1_2	Bradi3g47910.1	518	0.0
Arabidopsis v10	AT5G40760.1	515	2e-180	\| Symbols: G6PD6 \| glucose-6-phosphate dehydrogenase 6 \| chr5:16311284-16314556 FORWARD LENGTH=515