barSeed - Barley Seed Development Database

Probe CUST_18794_PI390587928

Source Contig U35_15048

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18794_PI390587928	Hv_44K_v2	GACGGTTGTTTTTCGTAAATTTTTGGTGGAAGTACCGGCGGTATGAAATAAGAGCAAATT	904	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.365	1.230	1.039	0.802	0.391	0.559
Raw	15506.433	20928.830	16072.400	19053.053	3361.470	5239.387

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_50213.1	1070	8e-25	937 - 996	100	60 / 60	plus
Harvest21	ABC02364	986	3e-25	902 - 961	100	60 / 60	plus	ABC02364
Harvest35	U35_15048	990	3e-25	905 - 964	100	60 / 60	plus

Contig Sequence (990 bp)

>U35_15048 990 Hv_44K_v2
CGCCGCATCCTCTTCGTCCTCCCCTCCGCCGCAGTGCAGGTAAGAAGAAGGGGTCGAAAT
GGTGAAGCACAACAATGTTATCCCCAACGGCCACTTCAAGAAGCATTGGCAGAACTATGT
CAAGACCTGGTTCAACCAGCCTGCCCGCAAGCAGAGGCGCCGCATTGCTCGTCAAAAGAA
GGCAGTGAAGATCTTCCCTCGCCCAACATCTGGTCCTCTTCGTCCCATTGTGCAATGCCA
GACTCGGAAGTACAACATGAAGGCAAGGGCTGGGAGAGGCTTTACCCTTGAGGAGCTGAA
GACAGCGGGCATCCCGAAGAAGCTAGCTCCTACTATTGGCATTTCTGTGGATCACCGCCG
TAAAAACAGGTCACTTGAGGGTATGCAGTCTAACATTCAGAGACTCAAGACGTACAAGGC
TAAGCTGGTTATCTTCCCAAGGCGTGCTCGCAAGGTTAAGGCTGGTGATTCTACCCCTGA
GGAACTTGCCACAGCCACCCAGGTCCAGGGTGACTATATGCCTATTACTCGTGGTGAGAA
GCGCTTGGTTGAGCTCATGAAGGTCACTGAGGAGATGAAGGCGTTCAAGGCCTACGGCAA
GCTCTGTGTCGAGAGGATGAACCAGCGGCAGCTTGGTGCCCGCACGAAGAAGGCCGCCGA
GGCAGAGAAGGAAGAAAAGAAGTGATAAGATATTTTGTTTCATGCTAGTGAATGTTATCA
TCGGGGACTTGTCCTAAATTTTGTCTTGCGGCTGGAAATAGAGACCAGGCGATGGTTTTG
ATACGTGGTACTTGTTTGCATGGTATGCTGTTCAGTGAGTCGATGGATTTCTACCCTTGT
TGGAGGGTCAGGCTATGACTTGTTTCTTCTTCTATTTGTACCCAAAATGTACTGGTCAAG
TTATGACGGTTGTTTTTCGTAAATTTTTGGTGGAAGTACCGGCGGTATGAAATAAGAGCA
AATTGCCTTTTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15048 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g02510.2	209	2e-113	protein\|ribosomal protein L13, putative, expressed
Brachypodium v1_2	Bradi3g01600.1	209	7e-117
Arabidopsis v10	AT3G49010.1	206	2e-98	\| Symbols: ATBBC1, BBC1, RSU2 \| breast basic conserved 1 \| chr3:18166971-18168047 REVERSE LENGTH=206