barSeed - Barley Seed Development Database

Probe CUST_18789_PI390587928

Source Contig U35_27020

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18789_PI390587928	Hv_44K_v2	TATTCTGAACCTGGAAAGACGATTGCTGTTTATCGAAGGTCAAATTTAAGTAAGCACAAA	355	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.115	1.050	1.153	0.848	0.624	0.555
Raw	342.762	471.695	479.536	498.561	142.349	140.101

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373995	2330	6e-24	735 - 793	100	59 / 59	plus	ABC12804 ABC23073
MLOC	MLOC_10734.4	2338	6e-24	1741 - 1799	100	59 / 59	plus	ABC23073
MLOC	MLOC_10734.1	3189	6e-24	2592 - 2650	100	59 / 59	plus	ABC23073
JLOC1	JLOC1_7043.2	2602	3e-24	2005 - 2063	100	59 / 59	plus
JLOC1	JLOC1_7043.1	2607	3e-24	2010 - 2068	100	59 / 59	plus
Harvest21	ABC23073	429	3e-25	356 - 415	100	60 / 60	plus	ABC23073
Harvest35	U35_27020	429	3e-25	356 - 415	100	60 / 60	plus

Contig Sequence (429 bp)

>U35_27020 429 Hv_44K_v2
GGTTTATAGTGAAGATAATTTACCTGGTGAAAAAAGGACAACTAATAACAATAATGCTCA
TGTAGAGGAAGTGAACAACAAAGAAGGCAACCAACAGTCCCACAGTAATTCTCAGTCTAC
TATTAAACTAAAGTTAGTCAGGTCAAGAGGCATTCCAGATGCAAAAGGTTCACCGGGCAA
ATCAAAGACTACTGCAGTAGGGAGTGACGTGAACTCTGAGTGTGATAAAGTTCCCATGCA
GCATGACGAGGACCCTACCACCAATCAACATATAAGCAGTGACTTCCCTAGTGTGTCTAG
AGATTTCCAGGAATGCACAGATAAAAGCACTGGTTATCATGATTCAAGGAAGTTCTATTC
TGAACCTGGAAAGACGATTGCTGTTTATCGAAGGTCAAATTTAAGTAAGCACAAAAAAAA
AAAAAAAAA

Homology of Contig U35_27020 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None