barSeed - Barley Seed Development Database

Probe CUST_18787_PI390587928

Source Contig U35_27022

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18787_PI390587928	Hv_44K_v2	CCAGGAACAAGATGGAATCAGGCCTTTTACTATGCCTTTTATGAAGCTTGCTTGTACTGC	389	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64699.1	1094	7e-23	757 - 816	98	59 / 60	minus	ABC13844
JLOC1	JLOC1_42510.2	1261	4e-23	279 - 338	98	59 / 60	plus
JLOC1	JLOC1_42510.1	881	4e-23	279 - 338	98	59 / 60	plus
Harvest21	ABC22611	449	3e-25	390 - 449	100	60 / 60	plus
Harvest35	U35_27022	449	3e-25	390 - 449	100	60 / 60	plus

Contig Sequence (449 bp)

>U35_27022 449 Hv_44K_v2
CGGCGACCAGGCAGAGGAATGGCGACGACACTGGCGGGCCGCCGCCTGCTCCTGCTGCGG
CGATGCGCGGGCGGCCGGCGGCTTTTTGGGACGGCGGCGGAGGCGTCACCGGGGCCGGGC
GGGGAGGAGGCGGGGGGCGAGGCGATCTACGTGAGGAAGCCGTCCTCCTCCGCGACGCGG
GACGAGACCTCGGTGGCGATGCCCATGTCGTTCATGACGGGGTCCGTGGTGGGGAAGCGG
TTCTACCGCGACGCCACCGTGCGCCGCGCCGACGACGGCAACGGGTGGACGGTCATGCTC
GACTACCGCACCCTCAAGACGCCCGCAAAGCGCCCGCTCAAGCTGCACTCGCGCAAGCTC
GCCATGGCCGTCGCCGCCGAGTGGGAGTACCAGGAACAAGATGGAATCAGGCCTTTTACT
ATGCCTTTTATGAAGCTTGCTTGTACTGC

Homology of Contig U35_27022 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44940.1	322	8e-56	protein\|ATP12 ATPase, putative, expressed
Brachypodium v1_2	Bradi1g19710.1	307	3e-58
Arabidopsis v10	None