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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_18785_PI390587928Hv_44K_v2AGGACATTCTTCATCTTTCATGGTATCTCCTTCATGGCATCTATTGTTGTGATCATGTTT692GeneList: darkgrey
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4350.7801.3411.9140.9951.073
Raw 12.4339.40317.52735.6146.4097.462



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_50585.13813e-21213 - 2729758 / 60plus None
Harvest35U35_413167523e-25693 - 75210060 / 60plus



Contig Sequence (752 bp)

>U35_41316 752 Hv_44K_v2
GCGTAATCTACTATTAATTCTTTCTGTTCTAGCTGCAACCGTCACATACCAAGCTGGTAT
GAGCCCTCCGGGAGGTGTATGGTCAGATGACAAGGAGGTCAGTGGCACACCAGGCAATCC
AGTACTTCAGCACAATCATTCAAAACGCTATGATGTGTTCTACTACTCAAATTCTGCCAC
ATTCATGTCATCTGTGGTTATCATAATACTACTTGTGAACAAGAAATCCTGTGAGAATGG
TATCAAGTCTTATGCACTGAGTATGTCTGGTGGTGGGCTTGGTTGGCCTCTTGATTGCCT
ATGCTGCAGGAAGCTGCAGGAGATCAAAAGAATCTATTTATCTCATCATCATCGCTGCTG
CAGTTCTGATCTCTCTTGTGATTCAAGTCCTTATACTCTCTTCAACGCATGATACAGTAG
GAGGGCCATGGAGCAAATGCATGGAACGCCTGCTGAAGCGGCTTCTTCGTCTGAAGGATG
GCGGGCAACAAACTGTTCCTGATCAGCAAGGAAGTTTGGAACATGCTGAGAAAAATGAGA
GGAAGAGGCACAAATATCTGATGCTCCTTGCAGTTTTAGCAGCCTCCATCACATACCAAG
CTGGTCTGAACCCGCCTGGTGGTTTCTGGTATGATGATCCCAACCATGTTGCAGGCAATC
CAGTCCTTCATGATATTCATCCCTGGCGATACAGGACATTCTTCATCTTTCATGGTATCT
CCTTCATGGCATCTATTGTTGTGATCATGTTT



Homology of Contig U35_41316 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os06g18900.112192e-71protein|cadmium tolerance factor, putative, expressed
Brachypodium v1_2Bradi1g43310.111743e-89
Arabidopsis v10None