barSeed - Barley Seed Development Database

Probe CUST_18784_PI390587928

Source Contig U35_27023

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18784_PI390587928	Hv_44K_v2	AACCCCAAAACTTGATGTTTCACACAAACAAATGCAGATTGCAAGTATCAATGTTTGGAT	293	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66398.1	320	2e-24	199 - 258	100	60 / 60	minus	None
MLOC	MLOC_66400.1	1099	2e-24	935 - 994	100	60 / 60	minus	None
MLOC	MLOC_66400.2	1052	2e-24	884 - 943	100	60 / 60	minus	None
MLOC	MLOC_66400.5	1208	2e-24	996 - 1055	100	60 / 60	minus	ABC23293
Harvest35	U35_27023	353	3e-25	294 - 353	100	60 / 60	plus

Contig Sequence (353 bp)

>U35_27023 353 Hv_44K_v2
TTGCGGCAAAACAACACTGGAAAGTTACTCTGGCAAGTCTTTGGCATCCAAGCCGCGTCG
TTGTGCCTCTTTGGCATCCAAGAGCATGAAGATATTATGTGGGATGCATTCCAGCGTTCA
GATGCAATGCAAAGAAGATATGAGCACAATGCTAACTTGATTAAGGTGTCAGGGATGTGA
CAGTGAGGGAGTCTGCTGATGCACTGGATATTTCAGCTAATTTGTATAGCTGTTGAACTG
AATCCTTTGTTCCAATTGTATAAGTTTTGAACTTAATTCTTGAACTCTGCCAGAACCCCA
AAACTTGATGTTTCACACAAACAAATGCAGATTGCAAGTATCAATGTTTGGAT

Homology of Contig U35_27023 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None