barSeed - Barley Seed Development Database

Probe CUST_18779_PI390587928

Source Contig U35_27026

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18779_PI390587928	Hv_44K_v2	CTTGAAAGATCATTTGATCTACGTGATGCAAATACGCTCGTTGTCTTTGGTGAAATTGTG	500	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.108	1.008	1.545	1.193	0.690	0.584
Raw	72.821	95.803	139.708	164.902	34.512	32.217

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15152.1	3208	2e-24	2811 - 2870	100	60 / 60	plus	None
JLOC1	JLOC1_10372.1	3211	8e-25	2729 - 2788	100	60 / 60	plus
Harvest21	ABC34969	352	3e-25	290 - 349	100	60 / 60	plus
Harvest35	U35_27026	563	3e-25	501 - 560	100	60 / 60	plus

Contig Sequence (563 bp)

>U35_27026 563 Hv_44K_v2
TCGCACTAACACAACTGCTGGTTCATAATGAGGCAAAACATATGGTGGATTTCCTTGTAT
TGTGAAACCAAATAATATGCAAGTTCAATTCTTCATCAACTGGCATACTGGACGATGTCT
TCCCTACTATTGCCAGTCGTTTGTCTGTGATACTGTCACAGGATGCCTCTTCTACTGGTC
CAGCAGGCAATACCGAAGAAATGCGTGAACTGCAAGATCTGCAGAGGACATTATACACAT
TCCTCCATGGGATGGTTACACATGATCTGTCTACAATTCTCCTTGCTCCTACCTGTAGGC
AGTATTTGGAAACCATAATGCAGTTACTTTTGTTTACTTCCTGCAGTCATAAAGATATAC
TGCTCCGGAAGGCTTGTGTGCAGATTTTTGTCAAACTTATAAAAGACTGGTGCACTACAT
CCAAAGCTGATGATAAGCTTCCTGGCTTCCGAGTATTCATGATTGAGAAGTTTGCTACTG
GTTGCTGTTTACACAGTGTCCTTGAAAGATCATTTGATCTACGTGATGCAAATACGCTCG
TTGTCTTTGGTGAAATTGTGATG

Homology of Contig U35_27026 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g42180.1	981	1e-79	protein\|exportin 1, putative, expressed
Brachypodium v1_2	Bradi1g21620.2	981	4e-107
Arabidopsis v10	AT1G72560.1	988	4e-67	\| Symbols: PSD \| ARM repeat superfamily protein \| chr1:27325026-27329467 REVERSE LENGTH=988