barSeed - Barley Seed Development Database

Probe CUST_1875_PI390587928

Source Contig U35_2791

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1875_PI390587928	Hv_44K_v2	CAAGGAAGATAAATTTGGGTTCGGTTATTGGCAAGGACGGTGTTTAAGATGATCAAAAAA	756	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.008	1.410	1.767	1.172	0.450	0.484
Raw	21.180	48.775	51.192	51.488	6.701	8.166

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_2791	827	3e-25	757 - 816	100	60 / 60	plus

Contig Sequence (827 bp)

>U35_2791 827 Hv_44K_v2
GGTGGCATCATCGTCTTCCTCCTCTCTTATCCGGAACTACACCATGCTCCCGATGTCCGT
CCACCCCGCTACTACGCCGGCCCTCGCGTCGCGGCCCCGCGTCTCCCTGCCCAGACCTTC
CACACCCTCCTCCTCTTCCAGCCTCGTCCACCTCAAGAGCAGGAGGCCACCCCTTCGCTC
GCTCCGCAGCCTCACCGCCGCCGCCGCCGCCGCCGCCGTCGAAGCGGGGGAGCCATACTT
CGGTTTGGGGGACGACGAGCCACTTGGCGGAGAAGGAGACGCGGAAGCCGTGGTCGAAAG
CGAGGAGTACAAGGTGGAGGTGCCTGAAAAGCAGGACCCGATGCTGGTACTGAAGTTCAT
ATGGATGGAGAAGAACATTGGCATAGCGCTTGACCAGATGGTTCCGGGTGTTGGTAGCAT
CCCCTTAAGCCCCTACTACTTCTGGCCGCGGAAAGATGCATGGGAGGAACTGAGAGCGAA
ACTCGAGGAGAAAGAGTGGATCTCGCAGAAGCAGATGATCATCCTTCTCAACCAGGCCAC
GGACATCATCAACCTCTGGCAGCAAGGCGGCGGCAGCTTGTCGACATGAGGGGCTCTATC
TTCTCCCAACCTCACAACCTGTTTAGTGTCTTTCTTCTTGCTTTGTTGTTAATTAATGTT
AAAGCCACAACGCCACATGGTACATGATCCTGTAGATCGATTCAATCTCTTCTCATATGA
TTCTGTTTGTGGAGAATGAATTTTGATTAATCCTTGCAAGGAAGATAAATTTGGGTTCGG
TTATTGGCAAGGACGGTGTTTAAGATGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2791 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g38750.1	184	2e-55	protein\|plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi5g12430.1	181	8e-58
Arabidopsis v10	None