barSeed - Barley Seed Development Database

Probe CUST_18752_PI390587928

Source Contig U35_27031

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18752_PI390587928	Hv_44K_v2	ATGTATGATTTGAACTTGAAGCAGCACATGCAAAATCTTGGAAGTGCAGTTGGGGCCAAA	344	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.289	0.745	1.987	1.686	1.046	0.951
Raw	14.117	59.421	134.077	171.010	38.449	38.726

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58898.5	3778	2e-23	2216 - 2273	100	58 / 58	minus	ABC32405
MLOC	MLOC_58898.6	1644	2e-23	171 - 228	100	58 / 58	minus	ABC32405
JLOC1	JLOC1_38292.3	1583	1e-23	1367 - 1424	100	58 / 58	plus
JLOC1	JLOC1_38292.2	3626	1e-23	1407 - 1464	100	58 / 58	plus
JLOC1	JLOC1_38292.1	3623	1e-23	1407 - 1464	100	58 / 58	plus
Harvest21	ABC32405	400	3e-25	327 - 386	100	60 / 60	plus	ABC32405
Harvest35	U35_27031	418	3e-25	345 - 404	100	60 / 60	plus

Contig Sequence (418 bp)

>U35_27031 418 Hv_44K_v2
TCCCAGGAGAGGCCAGCACCGGCAATGGTTGGCACTCAATCTTGCCCTCTGGCTGGTCCT
GGGCAGGTTTGTTCTCAGCGCTTGCATTGCCATACGTTGGAGGGATATTTTGAAGAACGA
AGCTGCTCCAGAATTTTGGAAACTGTGAGAGTTGAAGTGATGGCAAAGAGCTAGAGTTTT
TTCTTTAGCTGTAGTGGTTGTATGATTAGGCCAGAATTGTGTGCTAGTAGGAAGTACGCT
TATTGCCTGTATTAACCAGTGGATGTAGTCTCTAGGTGTATGAAATCAAATGCTGATTAT
GTGCACATCTGCTCTTGCAAGTTGTTGTATTTTGCTCAGTTTGAATGTATGATTTGAACT
TGAAGCAGCACATGCAAAATCTTGGAAGTGCAGTTGGGGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_27031 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None