barSeed - Barley Seed Development Database

Probe CUST_18742_PI390587928

Source Contig U35_8582

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18742_PI390587928	Hv_44K_v2	AATTTGAGCTTTTTTAGAAAATGCCTCCGCGAAGGGAGTGGTGTAGATGAAGCCACTCTG	1128	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.578	1.794	1.133	0.836	0.408	0.495
Raw	775.750	1403.836	756.330	888.269	151.217	199.430

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376530	1597	2e-24	1340 - 1399	100	60 / 60	plus	None
MLOC	MLOC_22771.1	714	2e-24	159 - 218	100	60 / 60	minus	None
JLOC1	JLOC1_15775.1	851	8e-25	509 - 568	100	60 / 60	plus
Harvest21	ABC51010	475	5e-23	417 - 475	98	58 / 59	plus
Harvest35	U35_8582	1224	3e-25	1129 - 1188	100	60 / 60	plus

Contig Sequence (1224 bp)

>U35_8582 1224 Hv_44K_v2
GGCAGATCGAGCAGCTCAAGCGGTGCGAGCCGCTGGCGGAGGCGGAGGTCAAGGCGCTCT
GTCTCAAGGCCATGGAGATCCTCGTCGAGGAGAGCAACGTCCAGCGCGTCGACGCCCCCG
TCACGATATGTGGAGACATTCATGGACAGTTCTATGACATGAAAGAACTTTTCAAAGTTG
GAGGTGACTGCCCAAAGACAAACTACTTGTTCCTTGGGGACTTTGTTGACCGAGGATTTT
ATTCCGTTGAAACATTTTTGCTTCTTTTGGCCTTAAAGGTTAGGTACCCAGATCGTATAA
CTTTAATACGAGGAAATCACGAGAGCAGGCAGATCACACAAGTTTATGGCTTCTATGATG
AGTGTCTTCGTAAATACGGCTCGGTGAATGTCTGGAGATATTGCACAGAAATATTTGACT
ATTTAAGTTTGTCTGCACTTATTGAGAACAAAATCTTCAGCGTCCATGGAGGCCTTTCCC
CTGCTATTACGACATTGGATCAGATCAGAGTAATAGATCGCAAGCAAGAAGTGCCTCATG
ATGGTGCCATGTGTGACCTTCTTTGGTCTGATCCAGAGGATGCTGTAGACGGCTGGGGAT
TAAGTCCTCGAGGTGCAGGGTTCCTCTTTGGTGGAAATGTTGTTTCTTCATTTAACCACT
CAAACAACATAGATTATATTTGCCGTGCTCATCAACTAGTCATGGAAGGATTCAAGTGGA
TGTTCAATAACAAGATTGTTACTGTATGGTCTGCTCCTAACTATTGCTACAGGTGTGGCA
ATGTTGCTGCAATCCTAGAGCTTGATGAGAACCTGAATAAGCAGTTCCGTGTATTTGAAG
CTGCTCCACATGAATCAAGAGGTGTTCCTGCGAAGAGGCCTGCCCCAGATTACTTTCTTT
GAGACTGCACACATGGCATGTGACACGCTGTCTTTTCATGCCCTTGAGCACCGGCGGGCG
GATAGGGGCCATTGAAGGCGTGCCATGTTGGCAGATGAGCACGTGCTTTGCAAGGGATTA
GCCAGGAGGCGCTTTCGGGATGTATAAATCGATTGTTCTGTGTCCGTCGAGGTCTATTGT
TTGTAACAAAGTTGATGTCGGTATCCACTTCTCCCCCCAAATAGCTCCAATTTGAGCTTT
TTTAGAAAATGCCTCCGCGAAGGGAGTGGTGTAGATGAAGCCACTCTGGGCCCATGATGN
TAAATTTTGATGCCAGTCCCTTCC

Homology of Contig U35_8582 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g11230.1	308	protein\|Ser/Thr protein phosphatase family protein, putative, expressed
Brachypodium v1_2	Bradi4g27240.1	308
Arabidopsis v10	AT5G55260.1	305	\| Symbols: PPX2, PPX-2 \| protein phosphatase X 2 \| chr5:22416808-22418621 FORWARD LENGTH=305