barSeed - Barley Seed Development Database

Probe CUST_18740_PI390587928

Source Contig U35_8584

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18740_PI390587928	Hv_44K_v2	GACTGAATGAAACTGTATGCTGAATGTTGAAGAGATTGAGCGCCATTGACATTCGGTGTA	1371	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.268	1.416	1.227	0.956	0.413	0.437
Raw	1992.587	3485.240	2634.040	3159.983	492.810	562.121

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_8584	1434	3e-25	1372 - 1431	100	60 / 60	plus

Contig Sequence (1434 bp)

>U35_8584 1434 Hv_44K_v2
GAGAAGCTGACGATGTTGATAATGCAGCGGTGCCAGATAAGAAAGTAAAGCAGGCAGATG
CAAAAGAGGAGGAGGAGGAAGAGGAGGAGGACGAGGACGAGGAAGAAGAAGAAGAAGAGG
AAGAGGAAGAAGAGGTAGAAGAGGTAGAAGAGGAAGAGGCAGAAGAAGAGGGAGACCCGG
AGGAGCTGGTGGCTGCATCAGGTGATGAGGAGGAAGAGAACCCGGAGGAAGTAGACAATG
AAACACAGGAGGACCCAGAGGAAGCGGGGATGGAAGCACTGAAGGAGAAGAAGGGAGAAG
AGGTAAAGGTGGTGGTTCCTGCTGATGAGAAGATAGCCGAAGAAGCAGGGAAGAGCGAAG
TTAAGGAAGAGTCGAAGGCAACGGGGGAAGTTGTCAAGGAAGGGGAGAATGGTGCATTGT
GGCGAGCAGAGGCACATTTATTCCTGCAGATGGTTGCGGCATTTGGATTGAAAGACAAGT
TTGATGGAGAGTTCTTGAAGAGCCTGTTTGTTGCTAACCGTCGAAGGAAGGAACTTGCGA
GGTTTGCCTATATCCTCGGGTTTGAGGAGACCGTCGCAGATGTTGTTCAGGAATTGCTTA
CTTCAGGAAATGTAATTGAGGGTATATATATTGCTCATGAGGCATGTTTGCTTGAGCGAT
TTCCTCCTGCACCTCTTCTTCACTCTTATATAAAGGACTCCACTGAGAAGGCCCAGGCCA
TGCTGAGTAGTGGAAGACGCTCCAGTTCTGCTGTTGAGGAGTCTAAATCCTTGGAGTGCA
ACGCCTGCAAGGTTGTCATCAGGTGCGTTGAGTCCTGCCAGCTAGTACCCGTATTTAACA
TCGATCACTTAAAAAAGAAGGTGGCGAGGATGGTTAGAGAGAAGGCTGACCGGAAGAGGC
TAGGCAGCGGAAACAGATTCCAGAACAAGCGAGCACGGGGAGCAGCCGGGCCTCAGTCCT
TCCCTGCTGCAAAGTCTGCAAGGGCATCAGGCTCAGGCTACGGGCCATCATTCCAGAACC
CAGTGTCCCGTTCCTTTGGCTATGCGGCTCGTGCTGGGTACGTGAACCCGGCTGCTGCTG
CTCAGCCCTACTATGCGCCGGGGAGCATGGCAGCGCGGCGTGGCGGCGTGCTGTATGGCG
GACCTGGAGCAGCATTCGGGGCGCAGCAGCCGTACCACCGTTAAGGCCAGCCATAGCCGT
TGATGTTGCTGGACAAATTGTTGTTTCTTATTGATTTGTACCACCTTTTGCGTTGTAACA
TTTATCCTTGCCGTGTAACTCTTAGTCGACTGGATGCGATTTGAAGAGATTCAGTCTTGG
TATATGCTTGCTGCCTTCTTTTTGGCTGCCTCTGTATGCGAGATACCGTTTGACTGAATG
AAACTGTATGCTGAATGTTGAAGAGATTGAGCGCCATTGACATTCGGTGTAAGA

Homology of Contig U35_8584 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g08580.1	598	1e-88	protein\|frigida, putative, expressed
Brachypodium v1_2	Bradi2g05190.1	609	5e-117
Arabidopsis v10	None