barSeed - Barley Seed Development Database

Probe CUST_18734_PI390587928

Source Contig U35_8590

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18734_PI390587928	Hv_44K_v2	CATGTGGGCTTTTGGAGAAAGTATAACTCATATCACCATGGAAAATAGAAGAACTCTTTT	726	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15510.1	2005	2e-24	35 - 94	100	60 / 60	minus	ABC24074
JLOC1	JLOC1_10642.1	2244	8e-25	2045 - 2104	100	60 / 60	plus
Harvest35	U35_8590	854	3e-25	727 - 786	100	60 / 60	plus

Contig Sequence (854 bp)

>U35_8590 854 Hv_44K_v2
CTCAAAGCAGCATACCCTGGAAAATGTAGGCTCAGCTTTAGTTTCAGTAGCTTTAGAGGG
AGAAGACACTAAGGAAACAGGAGGAAATGAAAATACCAGTGCTTTGAAAGACCTTACCAA
ATCCAACATGAAGCCTCTCAAAAGGCCTCACGAAAGCCAGTTGCAAAGCTGCCCAGAAGG
AACCATGAGGATTGCCAAAAAAGTTTGCAAATCTGTGACTATGGCTCCTCAGTTCAAAGG
TTCATTTTTGCCCAAATCTGGAGGAGCGCCATTTAACTTACTCATGTTACCCCCAGATAA
AATATCCATGCTGGCCCCTCCACAGTACATGGATAATTCTGATCAAGACTTGCTGCTGGA
GGTTCCTCTCAATGCACGGCAGCCAGAGGCAGAGCTTCTTTACCAACCATTTCAACTTAG
CTCAGTAGCCCGAAGCTCCACCTCCGCAGACGTGGTTGCTGATGGCGAGGGCCGCCTCAA
GCAACCGTAGACTAGCAACCAGCATAGAAACAGGCGGTAGCAGTAGTTTCCCTTAGGTTC
TTGGATCATCATGGTATCTTTATTTACCGATCACCGGTAGGGCTTTGTGCGGTTTGTTCA
TGCTTGCACCGTCATTATCGCCCTGATTTACATTGACAATGTGCGTCTGCCAACGCTGGC
GAAATTGCCCGTTCAGCTAACATTTGTAGCGGTACTTTTGGACTAGGCTTGTGTTGGTTT
CCATAGCATGTGGGCTTTTGGAGAAAGTATAACTCATATCACCATGGAAAATAGAAGAAC
TCTTTTATTGGGGAAATGTAAAATGAAAATGATATCAGGGATTTCAACCATTTGCTTAAA
AAAAAAAAAAAAAG

Homology of Contig U35_8590 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g17370.1	444	9e-61
Arabidopsis v10	None