barSeed - Barley Seed Development Database

Probe CUST_18733_PI390587928

Source Contig U35_8591

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18733_PI390587928	Hv_44K_v2	AGGCCCTTGAAGACATCAAGCCTACGCTCGACTCCAAGCAAACGGCGGACCCCAAGCCTG	408	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.154	4.838	1.144	0.446	0.537	0.701
Raw	93.903	101.458	20.014	11.688	3.008	6.671

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360350	1601	2e-24	404 - 463	100	60 / 60	plus	ABC21002
MLOC	MLOC_20486.1	865	2e-24	308 - 367	100	60 / 60	minus	None
JLOC1	JLOC1_14199.1	867	8e-25	310 - 369	100	60 / 60	minus
Harvest21	ABC23751	639	3e-25	394 - 453	100	60 / 60	plus
Harvest35	U35_8591	655	3e-25	409 - 468	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_8591 655 Hv_44K_v2
GTCCTCCAAACTCTCCTTCCCTCCACAGCCACAAAAGCCGTCCCTGGAGCTCGCCAGCCA
AGAGACCTCACCTCACCTAGCTCCAAGGCACCAGGCGCACCATGGGTTGCTCGGGCTCTA
AGGAAGTGGCGGTGGCAGAGGTTGCCTACCGCCCTCCGGCCACCAGCGTCTCCCTGTTCG
ACATCAGCGCTGTCGAGGAGCCGTGGCTCATCGCTAAGCAGAACGCCGCCGCCGCCAACG
GCGACGTCAAGGCAGACCAGAGTGATGACGAATACGAAGACGACGATGAAGAGGAGGATG
CGGAGGAAGAGCAGGACACTCAGAAGCCCACCACCGGCGTGGCGCTCCCTATCCTCGACA
AGCTCGACGGCTACGAGCTCGCGCCGGCGTCGTGGTCCGAGGTGAGCAAGGCCCTTGAAG
ACATCAAGCCTACGCTCGACTCCAAGCAAACGGCGGACCCCAAGCCTGCCCCCAAGAAGA
AAAAGAAGAAGAAGAAGCAACCAGCTGAGGCACGGGCCCAGCCGGCGGCGGCGCCACCAA
CGCAGAAGGAGCAGCCGTCCCAGACGCCATCTGTTGCCGGCACGGGCGAAGCTGCCAAGA
AGGAGCCGCCGCCGGTGAAGCCGTATGCGCATGGCGCATCGGATTCTGACACGAG

Homology of Contig U35_8591 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None