barSeed - Barley Seed Development Database

Probe CUST_18729_PI390587928

Source Contig U35_8595

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18729_PI390587928	Hv_44K_v2	GGCCATTTGGGACAGTACACAATATATGTGTGTTGTAGTGTTTCCAAAACAAACAAATAA	513	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	16.707	2.878	1.246	0.483	0.075	0.094
Raw	7388.240	2130.469	795.464	483.187	27.065	36.526

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7599.1	642	2e-24	561 - 620	100	60 / 60	plus	ABC18194
Harvest21	ABC18194	614	3e-25	514 - 573	100	60 / 60	plus	ABC18194
Harvest35	U35_8595	614	3e-25	514 - 573	100	60 / 60	plus

Contig Sequence (614 bp)

>U35_8595 614 Hv_44K_v2
GAGTAGAACTATTCTTCTCGACGATCATCATCAAGAAAATGGCCATGGCCAGTCGTAGCA
CCGCTCTCCTCCTCCTCCTCGCGGCCGCTCTCCTGCTGGCCTCCTCCTGCCACGCATCGC
CATCGCCACCGCACGCCATCTCAGGCGGCGAGGGGAAGAAGAAGGCGGCGGACGTCGTGC
CGGCGGAGACGGACCCGTCCAAGTGCGAGATGATGGTGCCGTGCAGCGAGGAGAAGTGCA
CCGAGCACTGCGTCCGCATCGGGCTGGGCAACGCGAGGGGCTTCTGCTCCTTCCACGACC
TGCACTTCGAGTGCTGCTGCCCCATACCGCCGCCGCCCCGCCGCCTCTCCTCCTCCGGCC
GCCGGACCGGCTCCGTTTAGCCAAAGCTAGCGGGCAGCTCTTCGTCGGTGCGTGTAAGAG
ATGGATCGCTCGTCCATGTGTGTGTGCTTGCAAACGTGGTGTGGACAGAGATCGGAGTGC
ACGTACGCGTCGATCAGTAATAAAGTTTGCTCTGGCCATTTGGGACAGTACACAATATAT
GTGTGTTGTAGTGTTTCCAAAACAAACAAATAATAAAACTTTGACTGTTCTTGAGCTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_8595 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None