barSeed - Barley Seed Development Database

Probe CUST_18728_PI390587928

Source Contig U35_8596

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18728_PI390587928	Hv_44K_v2	CCGTGAATTAGTACTAATAAGGTTATTTGAATTGTGACCTCACCGAATCCTAATTAGGTT	328	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.854	6.206	0.675	0.706	1.057	0.942
Raw	50.361	65.607	5.091	8.549	2.700	2.669

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370754	3072	2e-24	2940 - 2999	100	60 / 60	plus	ABC23795
MLOC	MLOC_51884.2	1654	2e-24	1546 - 1605	100	60 / 60	plus	ABC23795
MLOC	MLOC_51885.1	4967	2e-24	1486 - 1545	100	60 / 60	plus	ABC23795
MLOC	MLOC_51885.2	4972	2e-24	1486 - 1545	100	60 / 60	plus	ABC23795
MLOC	MLOC_51884.1	1308	2e-24	1235 - 1294	100	60 / 60	plus	ABC23795
JLOC1	JLOC1_33174.1	2139	8e-25	1768 - 1827	100	60 / 60	plus
Harvest21	ABC23795	355	3e-25	276 - 335	100	60 / 60	plus	ABC23795
Harvest35	U35_8596	408	3e-25	329 - 388	100	60 / 60	plus

Contig Sequence (408 bp)

>U35_8596 408 Hv_44K_v2
GGGGAAGGCGGCATTCGAGAAGTTCAGCGGCAGGCTCAAGGAGGCGGAGGGCACCATCGA
CATGCGAAACAACAACCCGGAGAACAAGAACAGGTGTGGCGCCGGCATCGTGCCGTACGA
GCTGCTCAAGCCGTTCTCAGAACCAGGGGTCACTGGGAGAGGCATCCCCAACAGCATCTC
CATTTGATTGTTGCCCCAGGATAAGATATCATTGCACGTAGGATTATTAGGAATAAGATG
TACAGTATGTACGCACCCAGCAGCGATTGCTACCGGACATGACACGGCCCGGGAGAGGCA
TCTACTAGTGTGTCCCTGCTATTGTATGCCGTGAATTAGTACTAATAAGGTTATTTGAAT
TGTGACCTCACCGAATCCTAATTAGGTTAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_8596 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None