barSeed - Barley Seed Development Database

Probe CUST_18726_PI390587928

Source Contig U35_8598

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18726_PI390587928	Hv_44K_v2	ATCCGGAATTTGCTGTTGGCTTCGCAATGTTCGTTCACTTTATCTTGAGTCGGCGTTTGA	1409	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.339	0.554	1.167	1.752	1.127	1.096
Raw	406.677	1010.075	1937.200	4383.157	1038.350	1074.880

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65088.1	2375	2e-24	30 - 89	100	60 / 60	minus	ABC17164
JLOC1	JLOC1_42802.1	2349	8e-25	2213 - 2272	100	60 / 60	plus
Harvest21	ABC17164	1469	3e-25	1410 - 1469	100	60 / 60	plus	ABC17164
Harvest35	U35_8598	1469	3e-25	1410 - 1469	100	60 / 60	plus

Contig Sequence (1469 bp)

>U35_8598 1469 Hv_44K_v2
GGCTGGAAATACCATCGGCTTACTTCTTTCCCCTATTATCATGTCACGAACTGGAACATT
TGGACCCTTTGTGATTTTTGGTTTGTTTGGATTTCTGTGGGTGCTGGTGTGGATGTCTGC
TATAACAGGAACTCCTGGTGAACATCCTCAAATATCAGCATATGAACTAGAGTATATAAC
AAAGGGTCAGAAATTGGTGAAACCTCAAGTTCAAGGTGAAAAACTAAGAAAGATCCCTCC
GTTTAGAAACCTACTTTCTAAATGGCCAACCTGGGCTTTAATTTCTGCAAATGCTATGCA
TAGCTGGGGCTATTTCGTCATCCTTTCGTGGATGCCAGTGTATTTCAAAACCATATTTCA
TGTCAATCTGAGAGAAGCTGCATGGTTTAGTGCAATTCCCTGGGTCATGATGGCAGTTTT
AGGTTATGTGGCTGGTGTTGTATCAGATGCACTTATCCGAAATGGCACAAGCATTACTTT
AACTCGGAAGATAATGCAGACAATTGGCTTTGTGGGTCCTGGTATTGCTCTTATTGGTTT
AAATGCAGCAAAGAGTCCAGCCATTGCTTCAGCTTGGCTAACTATTGCTGTTGGTTTGAA
GTCCTTTGGTCACTCAGGATTCCTTGTAAACTTTCAGGAGATCGCTCCACAATATGCCGG
AGTGCTACATGGAATGGCAAATACGGCTGGAACATTTGCTGCCATTTTAGGAACTATTGG
AGCAGGATTCTTTGTTGATCGGATGGGTTCTTTCCGTGGATTTTTAACATTAACATCACT
TCTATATTTCAGCAGTGCCCTGTTCTGGGGATGTCTTTGCTACTGGAGAGCGTGTTGATT
TTGATGGCACTAGCTAGCACCAAAGAGGAAACATATAGTAAACGATTTGATGATTCACTG
GGAGTATTGTGGCATTATCATATCGGACAGTACTGAGAATTTCCATGAACCGAGATGAGC
ATTACACATCCGGACTACCACATCGTGTGCTTCAATGTAGTGGAAGTATGTGGTGAATTG
TCTTATTGTGGAAGCAGAGTGTCAGAGGTTTAGATCATGTGAATCTTTCCGCTGTATAAG
TCGGAAATGTGAATTTCAAGAGTCAAGGATGCTTGAAGCATGCCAGAGAATAAATGGCGG
TGTAGGAGTCATGCTTTAGGGGTGGCAAACTGGCAATGGTAGTGGTAGGGATTGAAAAAT
ATTTGCCAGCGTAGTTGAAAGGCTTGAACTAGCGTAGTTTTTGTGGCAAGAGTTGCCCTT
GTTTAAAATGGCTAGCAGATGTACTGCATGATTAGTGAAAAGGTGAGACCAGGAACCCAC
AAACAAAGTGGGGAACCTGTTGAGGGTGTAAAGACAGCAATGTAAGTCGTTGAGGGCATT
TAAACTCATAATGTGAGGCTACTGCAAATATCCGGAATTTGCTGTTGGCTTCGCAATGTT
CGTTCACTTTATCTTGAGTCGGCGTTTGA

Homology of Contig U35_8598 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g63290.2	354	3e-162	protein\|transporter, major facilitator family, putative, expressed
Brachypodium v1_2	Bradi2g55132.1	519	1e-166
Arabidopsis v10	AT3G46980.3	534	8e-118	\| Symbols: PHT4;3 \| phosphate transporter 4;3 \| chr3:17307294-17309899 REVERSE LENGTH=534