barSeed - Barley Seed Development Database

Probe CUST_18720_PI390587928

Source Contig U35_13605

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18720_PI390587928	Hv_44K_v2	TGTCAACTATCCAAAGGATAGATTTCTTGTAGCCATGCCGTGCATCCGCCTGCATTTTTT	786	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.001	3.442	0.719	0.510	1.106	0.953
Raw	20.491	33.213	5.806	5.330	4.131	3.282

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12897.2	4140	2e-24	4041 - 4100	100	60 / 60	plus	None
MLOC	MLOC_12897.1	4295	2e-24	4077 - 4136	100	60 / 60	plus	None
JLOC1	JLOC1_8680.1	4095	8e-25	3956 - 4015	100	60 / 60	plus
Harvest35	U35_13605	935	3e-25	787 - 846	100	60 / 60	plus

Contig Sequence (935 bp)

>U35_13605 935 Hv_44K_v2
GCAACAGCAATAAATGAGTGGAGCAGTGTGTTATACTCTGTGGTCTATACCTCTGCGCCG
ACTGTCATTGTCGCCATTCTCGATAAGGATCTGAGTCGAAGGACATTGCTGAAATATCCC
CAACTCTACGGTGCGGGGCAGCGCGAGGAGAGTTACAATCTAAGATTATTCATTTTCATC
ATGGTAGACTCCGTTTGGCAGAGCGTTGCAGTTTTCTTCATCCCTTACCTCGCATACAAA
AACAGCGCAATCGACAGCGGTAGCCTGGGAGACCTGTGGACACTGTCTGTTGTCATTCTT
GTCAACATTCACCTTGCCATGGATGTCATTAGATGGACTTGGGTCACTCATGCAGCAATA
TGGGGCAGTATTGTGGCGACATGGATTTGCGTTATCATCATAGACTCCATACCTACCTTG
CCCGGTTTCTGGGCAATCTATAAGGTGATGGGAACTGCATTGTTCTGGGCATTGCTTCTT
GCGGTGATTGTGGTTGGAATGATGCCTCATTTCGCTGCAAAGGCCATCAGGGAACATTTC
ATGCCCAATGACATCCAGATTGCGAGAGAGATGGAGAAGTCGCAAGATTCTCGTGATGTT
TATCATCCAGAAGTCCAGATGAGTACATCCACTCGAGCGTAGGAGTAGGGGATATTTGTT
CATTCGAGTAGGCTAGAGTTACACCTCTCTTTCTGAAGAAATTACACCTTTTCCTTGGTT
CTTTTTGTTGTGTGTATATAAAGCAATTCTTTTGGCAGTGAGCATGCTTCTTGTTGCTTG
CTACTCTGTCAACTATCCAAAGGATAGATTTCTTGTAGCCATGCCGTGCATCCGCCTGCA
TTTTTTTTTGTTACTTTATACGAAAAGAACCGTACAGGAGTTAATTGTACATATTCAGGA
ACTGATTTATATATGAACATTCTAAAAAAAAAAAA

Homology of Contig U35_13605 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g20949.1	1125	1e-121	protein\|phospholipid-transporting ATPase, putative, expressed
Brachypodium v1_2	Bradi1g63650.1	1125	1e-122
Arabidopsis v10	AT5G04930.1	1158	2e-82	\| Symbols: ALA1 \| aminophospholipid ATPase 1 \| chr5:1445509-1449568 FORWARD LENGTH=1158