barSeed - Barley Seed Development Database

Probe CUST_18718_PI390587928

Source Contig U35_13607

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18718_PI390587928	Hv_44K_v2	TGAACTTCTGCGGCTGTATGGCCGCAACCGCAAGTTCTACCTGAAGCGGAAACGGAACGA	48	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68036.2	3045	2e-24	2399 - 2458	100	60 / 60	minus	ABC18979 ABC42436
MLOC	MLOC_68036.3	1258	2e-24	739 - 798	100	60 / 60	minus	None
MLOC	MLOC_68036.1	4051	2e-24	3459 - 3518	100	60 / 60	minus	ABC18979 ABC42436
MLOC	AK365090	2301	7e-23	966 - 1025	98	59 / 60	plus	ABC42436
JLOC1	JLOC1_44976.1	2440	8e-25	492 - 551	100	60 / 60	plus
Harvest21	ABC22919	471	3e-25	49 - 108	100	60 / 60	plus
Harvest35	U35_13607	472	3e-25	49 - 108	100	60 / 60	plus

Contig Sequence (472 bp)

>U35_13607 472 Hv_44K_v2
TCCACCCCAAGACATCAGTGGCCACTTCTACAGCAGGAAGGTGAGGACTGAACTTCTGCG
GCTGTATGGCCGCAACCGCAAGTTCTACCTGAAGCGGAAACGGAACGACGGCTACCGGTC
GGAGATGGCGCGCTCCTTGTTCTGCATCTGCCCGCTGGGGTGGGCGCCATGGAGCCCTCG
TCTAGTGGAGTCGGTCCTCCTGGGCTGCATCCCCGTCGTCATCGCAGATGACATACGCCT
GCCGTTCCCCGGCGTGCTACGGTGGCCCGACATCTCGCTGCAGGTGGCCGAGAGGGACGT
GGCCGGCCTCGAGGCGGTGCTAGACCACGTCGCGGCGACCAACCTGACGACGATTCAGGG
GAACCTGTGGGACCCCGTGAAACGGAAGGCGCTGGTTTTTAACCGGCCGATGGAGGAGGG
AGACGCCACCTGGCAGGTCCTCAAGGAGCTTGAGGCGAAGCTGGAGCGGCTG

Homology of Contig U35_13607 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g01760.1	430	5e-90	protein\|exostosin family domain containing protein, expressed
Brachypodium v1_2	Bradi3g32610.1	415	8e-96
Arabidopsis v10	AT2G28110.1	448	5e-71	\| Symbols: FRA8, IRX7 \| Exostosin family protein \| chr2:11978024-11979641 REVERSE LENGTH=448