barSeed - Barley Seed Development Database

Probe CUST_18707_PI390587928

Source Contig U35_13621

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18707_PI390587928	Hv_44K_v2	GTAGTTAGTGCTTGTCTCCATTTTTCAAAATAACGCTATGGAATTGAAGGGAGGAAAAAA	579	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.606	0.506	0.949	3.638	2.224	4.001
Raw	2.725	2.651	10.887	58.846	14.270	27.856

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_23821.1	910	6e-21	788 - 843	98	55 / 56	plus
Harvest35	U35_13621	650	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_13621 650 Hv_44K_v2
GCTCACTGCAATCTCCATCGAAATCATACACCCATCAGCCCTTTCTTGCGCTTACATAGT
CGTGTAGCATCAAAGATCGATATGGCCATGGCCATGTGGAGAAAGAAGGAGACGGCCGGA
GCCAGCGGCGCGGCCCCGGCATGCGTTGTTCGGTTCGCCGGCGAGGGCGGGGGGAAGATC
CCCAAGGGCTACGTCCCGATGGTCCTCGTCGGCGACGAGGGAGAAGGGGACGAAAGGGTG
CTGGTTCACGTCGGGATGCTCACGGAGCCGTGCGTCTTGGCTCTGTTGGAGATGTCAGCG
CAGCGATTCGGGTACGGCCAGGGGGGCGTCCTGAGGATCCCGTGCGGCGTGGAGCGGTTC
GAGCAGACGGTCCGTGGCCACCGGCGGGAGACGCTGCAAGATCCTGCGTGCGCAGCAGCG
CACTAGGAGAGAGCCGGTGACCACAGTTTGTTTATTTATATACTAGTAGATCATTTATGG
GGCGCATTGCTGGGTTCGTCTATTTTAACTCTTAATTGTTAGGGATATAAATTAATTCAT
ATGCATTTGTTTAAAATGCTTTGAAGTATTGTGCCTTTTGTAGTTAGTGCTTGTCTCCAT
TTTTCAAAATAACGCTATGGAATTGAAGGGAGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_13621 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None