barSeed - Barley Seed Development Database

Probe CUST_18702_PI390587928

Source Contig U35_13628

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18702_PI390587928	Hv_44K_v2	AACAAGAAAGCTGATGTGCACACTCTCAAGTACCAGCTTTCTCTGTTTGAGACCGAGGTT	474	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52004.1	2326	7e-23	1175 - 1234	98	59 / 60	plus	ABC39730
JLOC1	JLOC1_33260.1	2336	4e-23	1176 - 1235	98	59 / 60	plus
Harvest21	ABC23035	564	3e-25	475 - 534	100	60 / 60	plus
Harvest35	U35_13628	565	3e-25	475 - 534	100	60 / 60	plus

Contig Sequence (565 bp)

>U35_13628 565 Hv_44K_v2
ATCACGGGCACAGACGGGGTCACCACCACGTCCCACCTCGTCAAAGCAATGTACGAGGCC
ATGGGTGTCAGGACCGGCATGGTAGGCGTTCTCGGAGCATATGCCTTCGGCACCAACAAG
CTGGATGCGCAGCCTGCTGCATCAGGTGATTCAATGGCCGTGCAGAAGCTGATGGCAACG
ATGTTGCACAATGGCGCTGAAGCGGTTGTGTTGGAGAAGACCACTGATGAGATGCTACCA
TCAGGTGTGGACAGTGAGATAGATTACGATATTGCCGTGCTGACCAATGTTAGGCATGGC
AATTTGGAGGCTAGCATGACATACGAGGGGTACATGAGCAGCATGGCTTCCCTTTTCTCC
AGAATGGTGGACCCTGAGCGCCACCGTAAGGTGGTAAACATCGATGATCCGAGCGCACCA
TTCTTTGCCGCCCAAGGCGGGCATGGTGTCCCGGTGGTGACATATTCATTTGAGAACAAG
AAAGCTGATGTGCACACTCTCAAGTACCAGCTTTCTCTGTTTGAGACCGAGGTTCTGGTA
CAGACACCGCACGGAATCCTTGAAA

Homology of Contig U35_13628 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g40130.1	758	9e-106	protein\|Mur ligase family protein, putative, expressed
Brachypodium v1_2	Bradi3g32820.1	756	1e-111
Arabidopsis v10	AT1G63680.1	772	3e-64	\| Symbols: ATMURE, PDE316, MURE \| acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases \| chr1:23614461-23617247 FORWARD LENGTH=772