barSeed - Barley Seed Development Database

Probe CUST_18701_PI390587928

Source Contig U35_13629

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18701_PI390587928	Hv_44K_v2	CAAGGTGAACTCCTCCCCTTGATGGCAAATAGACGATCAAGGCAAATTGAACCCAAAAAA	484	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.586	1.929	1.207	0.831	0.415	0.520
Raw	35.841	67.874	36.066	35.818	6.870	9.360

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC23005	555	3e-25	485 - 544	100	60 / 60	plus	ABC23005
Harvest35	U35_13629	555	3e-25	485 - 544	100	60 / 60	plus

Contig Sequence (555 bp)

>U35_13629 555 Hv_44K_v2
AATTCAAGCGGAGCAGAGGGCACTGGCTATATTGCTTAGGAGGCTGGGCATGATAAAGAA
GGATGAAGTGGATGAACGTGCCACCGACAGATGCTTGGCGCTGTTGGAGGCTTCTTTTCC
TAAAAGCTTGCTGCAGGCTATTTTCTGCGGTTCAGACATGGTGAAGGGCACTCTGGTGAG
TTATGGGGCATCTCGGCCCGTGACGTTCTTCTGATTTTCCCTTCCCTGTTTGTGGTGCAA
CCTCGCAATGGCTAGGGTCGTCGGAAGCCTCCTTGGTGAGTAGCTAGGTGTTATTGTAGT
GTCGTCTCTTGCTGGTGTCTAGGTGTAGGGCATTTGGACGGGCTGATGGTTTCGTCGTAA
ACCAAAAACCATGTTTGACCTCGAACCGTAGGGAATTATCATGTTTGCAGAGCAGGGTCT
CAAGCAACCCCCTGGACCTCTTTTTCAGTTCACCGTCCGTTATTTATTTCCGCAAGCATG
TGCTCAAGGTGAACTCCTCCCCTTGATGGCAAATAGACGATCAAGGCAAATTGAACCCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_13629 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None