barSeed - Barley Seed Development Database

Probe CUST_18699_PI390587928

Source Contig U35_25604

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18699_PI390587928	Hv_44K_v2	AAGAGGCATTTGCATGATGTCATTTCTCTAGGTGTTGGCACGGAACTCTTGATCACACCA	436	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373281	1771	2e-24	405 - 464	100	60 / 60	plus	None
MLOC	MLOC_13998.2	1702	2e-24	473 - 532	100	60 / 60	plus	None
MLOC	MLOC_13998.1	1754	2e-24	482 - 541	100	60 / 60	plus	None
JLOC1	JLOC1_9527.2	1777	8e-25	487 - 546	100	60 / 60	plus
JLOC1	JLOC1_9527.1	1753	8e-25	494 - 553	100	60 / 60	plus
Harvest21	ABC43318	473	3e-25	413 - 472	100	60 / 60	plus
Harvest35	U35_25604	497	3e-25	437 - 496	100	60 / 60	plus

Contig Sequence (497 bp)

>U35_25604 497 Hv_44K_v2
AGCACAAAGCGAAAGAACAACCCGAGAAAAAGGCAAAGCGCCGCCCGGCGAAAGCGGCGT
CGGCGGCGATGTTGCGGCAGATGCGATGGCTGACGGACAGGGAAGGGCGGTGGGAGCTGG
ACGTGGAGTCCCCGGCAACGATGGAGGGCACGGCGCGCCCGGTCCCGGGCGACCCGCTGC
CCCTCGGCCTCTCGCGGGGCCCCCGCGTCACCCGCACCAAGCAGCTCGACTTCTTCCACC
GCTTCATGGCCTCCCCGCTCGTCCCCTCCTTCTCCGCCTCCCGCGCCGGCCTCTCCTTCC
ATCACGCGCACCTCCTCCATCTCGCCCACAACTGGTCATGTACTATCTTGGAGCAGCTTC
ATGTACAGAAGCTTGTGGCAGCAGTGAAAGAAAGCTGTCAAATAGGCAAGAAGGGATCCC
CTGGTCCAATGATCTCAAGAGGCATTTGCATGATGTCATTTCTCTAGGTGTTGGCACGGA
ACTCTTGATCACACCAG

Homology of Contig U35_25604 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g14820.1	464	4e-55	protein\|expressed protein
Brachypodium v1_2	Bradi2g08832.1	462	5e-55
Arabidopsis v10	None